The 2.0 version of rSNPBase

Variant report

Variant rs12612957
Chromosome Location chr2:178342347-178342348
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178296400-178397000 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr2:178298800-178357800 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr2:178299400-178357800 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr2:178316200-178345600 Weak transcription Fetal Brain Male brain
5 chr2:178330800-178356800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr2:178331000-178354600 Weak transcription Rectal Smooth Muscle rectum
7 chr2:178331000-178357800 Weak transcription HUES6 Cell Line embryonic stem cell
8 chr2:178331000-178357800 Weak transcription Stomach Smooth Muscle stomach
9 chr2:178331000-178361600 Weak transcription Brain Substantia Nigra brain
10 chr2:178331000-178378600 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr2:178331200-178349000 Weak transcription Left Ventricle heart
12 chr2:178331200-178355000 Weak transcription Brain Inferior Temporal Lobe brain
13 chr2:178331200-178358000 Weak transcription Brain Angular Gyrus brain
14 chr2:178331200-178378600 Weak transcription Placenta Placenta
15 chr2:178331200-178379200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
16 chr2:178331400-178343600 Weak transcription Fetal Brain Female brain
17 chr2:178331400-178348000 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr2:178331400-178388400 Weak transcription Primary T helper naive cells fromperipheralblood blood
19 chr2:178331600-178343200 Weak transcription Fetal Thymus thymus
20 chr2:178331600-178345800 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr2:178331600-178351800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr2:178331600-178357800 Weak transcription Colonic Mucosa Colon
23 chr2:178331600-178385600 Weak transcription Spleen Spleen
24 chr2:178331800-178347800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
25 chr2:178331800-178349800 Weak transcription Esophagus oesophagus
26 chr2:178331800-178351200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr2:178331800-178360600 Weak transcription Lung lung
28 chr2:178331800-178373800 Weak transcription Gastric stomach
29 chr2:178331800-178375800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
30 chr2:178331800-178375800 Weak transcription Pancreas Pancrea
31 chr2:178331800-178389400 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr2:178332000-178343600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
33 chr2:178332000-178392800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr2:178332000-178393800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr2:178332800-178348200 Weak transcription NHDF-Ad bronchial
36 chr2:178332800-178356800 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr2:178335000-178348000 Weak transcription Duodenum Mucosa Duodenum
38 chr2:178335000-178410600 Weak transcription Thymus Thymus
39 chr2:178335200-178349000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
40 chr2:178335400-178343600 Weak transcription Fetal Intestine Small intestine
41 chr2:178337000-178344800 Strong transcription Dnd41 blood
42 chr2:178337200-178343200 Weak transcription Primary T cells fromperipheralblood blood
43 chr2:178337400-178342800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr2:178337400-178344000 Weak transcription HUES64 Cell Line embryonic stem cell
45 chr2:178337400-178347800 Weak transcription Primary T regulatory cells fromperipheralblood blood
46 chr2:178337400-178356800 Weak transcription HUES48 Cell Line embryonic stem cell
47 chr2:178337400-178357800 Weak transcription iPS-20b Cell Line embryonic stem cell
48 chr2:178337400-178358000 Weak transcription Primary B cells from peripheral blood blood
49 chr2:178337600-178342400 Weak transcription Fetal Adrenal Gland Adrenal Gland
50 chr2:178337600-178386200 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015