The 2.0 version of rSNPBase

Variant report

Variant rs6725096
Chromosome Location chr2:178355829-178355830
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178296400-178397000 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr2:178298800-178357800 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr2:178299400-178357800 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr2:178330800-178356800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr2:178331000-178357800 Weak transcription HUES6 Cell Line embryonic stem cell
6 chr2:178331000-178357800 Weak transcription Stomach Smooth Muscle stomach
7 chr2:178331000-178361600 Weak transcription Brain Substantia Nigra brain
8 chr2:178331000-178378600 Weak transcription Skeletal Muscle Female skeletal muscle
9 chr2:178331200-178358000 Weak transcription Brain Angular Gyrus brain
10 chr2:178331200-178378600 Weak transcription Placenta Placenta
11 chr2:178331200-178379200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
12 chr2:178331400-178388400 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr2:178331600-178357800 Weak transcription Colonic Mucosa Colon
14 chr2:178331600-178385600 Weak transcription Spleen Spleen
15 chr2:178331800-178360600 Weak transcription Lung lung
16 chr2:178331800-178373800 Weak transcription Gastric stomach
17 chr2:178331800-178375800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr2:178331800-178375800 Weak transcription Pancreas Pancrea
19 chr2:178331800-178389400 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr2:178332000-178392800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
21 chr2:178332000-178393800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr2:178332800-178356800 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr2:178335000-178410600 Weak transcription Thymus Thymus
24 chr2:178337400-178356800 Weak transcription HUES48 Cell Line embryonic stem cell
25 chr2:178337400-178357800 Weak transcription iPS-20b Cell Line embryonic stem cell
26 chr2:178337400-178358000 Weak transcription Primary B cells from peripheral blood blood
27 chr2:178337600-178386200 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr2:178338000-178403000 Weak transcription Brain Hippocampus Middle brain
29 chr2:178338200-178357800 Weak transcription Fetal Intestine Large intestine
30 chr2:178339000-178359800 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr2:178339400-178357800 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr2:178339800-178394400 Weak transcription Hela-S3 cervix
33 chr2:178340200-178358000 Weak transcription Aorta Aorta
34 chr2:178340200-178358000 Weak transcription HSMMtube muscle
35 chr2:178342400-178357800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr2:178342400-178392000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
37 chr2:178342600-178391000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr2:178343000-178358000 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr2:178343200-178357800 Weak transcription Muscle Satellite Cultured Cells --
40 chr2:178343200-178358000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr2:178343800-178379400 Weak transcription NHEK skin
42 chr2:178343800-178391200 Weak transcription HMEC breast
43 chr2:178344000-178357800 Weak transcription Fetal Muscle Leg muscle
44 chr2:178344000-178374000 Weak transcription Fetal Muscle Trunk muscle
45 chr2:178344200-178358000 Weak transcription Fetal Thymus thymus
46 chr2:178344200-178371000 Weak transcription A549 lung
47 chr2:178344400-178357800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr2:178344600-178357800 Weak transcription K562 blood
49 chr2:178344600-178358000 Weak transcription Primary T cells from cord blood blood
50 chr2:178344800-178358000 Weak transcription Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015