The 2.0 version of rSNPBase

Variant report

Variant rs2123643
Chromosome Location chr2:178273144-178273145
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178258800-178277200 Weak transcription Right Ventricle heart
2 chr2:178258800-178285000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
3 chr2:178258800-178294200 Weak transcription Thymus Thymus
4 chr2:178260200-178280200 Weak transcription Primary T helper naive cells fromperipheralblood blood
5 chr2:178260400-178285600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr2:178262800-178279200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr2:178263200-178275400 Weak transcription Brain Substantia Nigra brain
8 chr2:178263400-178291800 Weak transcription Duodenum Mucosa Duodenum
9 chr2:178264000-178273200 Weak transcription HUES64 Cell Line embryonic stem cell
10 chr2:178264200-178282800 Weak transcription Dnd41 blood
11 chr2:178264200-178291600 Weak transcription Primary T regulatory cells fromperipheralblood blood
12 chr2:178264400-178280400 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr2:178265600-178273200 Weak transcription HSMMtube muscle
14 chr2:178265600-178287000 Weak transcription K562 blood
15 chr2:178266000-178280200 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr2:178266800-178273800 Enhancers Primary neutrophils fromperipheralblood blood
17 chr2:178268200-178277000 Weak transcription Fetal Stomach stomach
18 chr2:178268800-178278000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr2:178269000-178278200 Weak transcription A549 lung
20 chr2:178269200-178283000 Weak transcription HSMM muscle
21 chr2:178269200-178283000 Weak transcription Osteobl bone
22 chr2:178270000-178274200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr2:178270000-178280200 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr2:178270200-178275400 Weak transcription Brain Inferior Temporal Lobe brain
25 chr2:178270200-178278200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr2:178270200-178280800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr2:178270400-178281000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr2:178270400-178281000 Weak transcription Brain Hippocampus Middle brain
29 chr2:178270400-178294400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr2:178270800-178277800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr2:178271000-178274200 Weak transcription Fetal Intestine Small intestine
32 chr2:178271000-178274400 Weak transcription Brain Cingulate Gyrus brain
33 chr2:178271000-178274400 Weak transcription Small Intestine intestine
34 chr2:178271200-178273400 Strong transcription Primary hematopoietic stem cells blood
35 chr2:178271200-178274000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr2:178271200-178276000 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr2:178271600-178273200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr2:178271800-178273600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr2:178271800-178274400 Weak transcription Lung lung
40 chr2:178271800-178291600 Weak transcription Primary T helper cells PMA-I stimulated --
41 chr2:178272200-178273400 Strong transcription Primary T cells from cord blood blood
42 chr2:178272400-178274600 Weak transcription Pancreas Pancrea
43 chr2:178272400-178285600 Weak transcription Monocytes-CD14+_RO01746 blood
44 chr2:178272800-178273600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
45 chr2:178272800-178274400 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
46 chr2:178272800-178274600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr2:178272800-178274600 Weak transcription Primary T cells fromperipheralblood blood
48 chr2:178272800-178295200 Weak transcription Left Ventricle heart
49 chr2:178273000-178273400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr2:178273000-178273400 Weak transcription Primary T helper 17 cells PMA-I stimulated --

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Last update: Aug 31, 2015