The 2.0 version of rSNPBase

Variant report

Variant rs1551288
Chromosome Location chr2:178154839-178154840
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178145000-178160200 Weak transcription Adipose Nuclei Adipose
2 chr2:178145600-178160200 Weak transcription Aorta Aorta
3 chr2:178146600-178180400 Weak transcription Esophagus oesophagus
4 chr2:178147400-178160000 Weak transcription Fetal Adrenal Gland Adrenal Gland
5 chr2:178147400-178160200 Weak transcription Brain Inferior Temporal Lobe brain
6 chr2:178147600-178160400 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr2:178147800-178163000 Weak transcription Hela-S3 cervix
8 chr2:178147800-178187000 Weak transcription HSMM muscle
9 chr2:178147800-178190800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr2:178148400-178155400 Weak transcription Liver Liver
11 chr2:178148800-178160000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr2:178148800-178160200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr2:178149000-178160200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr2:178150200-178160200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr2:178150200-178160200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr2:178150400-178156400 Weak transcription Primary neutrophils fromperipheralblood blood
17 chr2:178151400-178157600 Weak transcription Fetal Intestine Small intestine
18 chr2:178151400-178157600 Weak transcription HepG2 liver
19 chr2:178151400-178167200 Weak transcription Left Ventricle heart
20 chr2:178151400-178179400 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr2:178152000-178171200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr2:178152400-178160200 Weak transcription Stomach Smooth Muscle stomach
23 chr2:178152800-178160200 Weak transcription Brain Cingulate Gyrus brain
24 chr2:178152800-178178200 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr2:178153200-178160200 Weak transcription Brain Hippocampus Middle brain
26 chr2:178153200-178160200 Weak transcription Ovary ovary
27 chr2:178153200-178160200 Weak transcription Stomach Mucosa stomach
28 chr2:178154400-178155000 Enhancers Small Intestine intestine
29 chr2:178154400-178155200 Enhancers Fetal Muscle Leg muscle
30 chr2:178154400-178155400 Enhancers Primary monocytes fromperipheralblood blood
31 chr2:178154400-178155600 Enhancers Primary hematopoietic stem cells short term culture blood
32 chr2:178154400-178155600 Enhancers Primary Natural Killer cells fromperipheralblood blood
33 chr2:178154400-178155600 Enhancers Dnd41 blood
34 chr2:178154400-178155800 Enhancers Primary T cells fromperipheralblood blood
35 chr2:178154400-178156400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
36 chr2:178154600-178155000 Enhancers Spleen Spleen
37 chr2:178154600-178155800 Enhancers Primary B cells from peripheral blood blood
38 chr2:178154600-178156000 Enhancers Primary T helper 17 cells PMA-I stimulated --
39 chr2:178154600-178156400 Enhancers Primary T helper cells fromperipheralblood blood
40 chr2:178154600-178156400 Enhancers Primary T killer naive cells fromperipheralblood blood
41 chr2:178154800-178155000 Flanking Active TSS Primary T cells from cord blood blood
42 chr2:178154800-178155000 Enhancers Primary hematopoietic stem cells blood
43 chr2:178154800-178155000 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
44 chr2:178154800-178155000 Enhancers Colonic Mucosa Colon
45 chr2:178154800-178155000 Enhancers Lung lung
46 chr2:178154800-178155000 Enhancers Rectal Mucosa Donor 29 rectum
47 chr2:178154800-178155200 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
48 chr2:178154800-178155200 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
49 chr2:178154800-178155200 Flanking Active TSS Primary T helper cells PMA-I stimulated --
50 chr2:178154800-178155200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015