The 2.0 version of rSNPBase

Variant report

Variant rs2602527
Chromosome Location chr2:178160472-178160473
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178146600-178180400 Weak transcription Esophagus oesophagus
2 chr2:178147800-178163000 Weak transcription Hela-S3 cervix
3 chr2:178147800-178187000 Weak transcription HSMM muscle
4 chr2:178147800-178190800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr2:178151400-178167200 Weak transcription Left Ventricle heart
6 chr2:178151400-178179400 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr2:178152000-178171200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr2:178152800-178178200 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr2:178155600-178174000 Weak transcription Primary hematopoietic stem cells blood
10 chr2:178155800-178166600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr2:178155800-178167000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr2:178155800-178167400 Weak transcription Primary B cells from cord blood blood
13 chr2:178155800-178185200 Weak transcription Monocytes-CD14+_RO01746 blood
14 chr2:178156400-178160600 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr2:178156400-178172000 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr2:178156800-178160600 Weak transcription Primary T helper naive cells from peripheral blood blood
17 chr2:178157800-178171600 Weak transcription Primary T cells from cord blood blood
18 chr2:178160000-178160600 Enhancers Fetal Stomach stomach
19 chr2:178160000-178160800 Enhancers Cortex derived primary cultured neurospheres brain
20 chr2:178160000-178161000 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr2:178160000-178161200 Enhancers HepG2 liver
22 chr2:178160000-178161400 Enhancers Fetal Adrenal Gland Adrenal Gland
23 chr2:178160200-178160600 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
24 chr2:178160200-178160600 Enhancers Primary hematopoietic stem cells short term culture blood
25 chr2:178160200-178160600 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
26 chr2:178160200-178160600 Flanking Active TSS Brain Inferior Temporal Lobe brain
27 chr2:178160200-178160800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
28 chr2:178160200-178160800 Enhancers Adipose Nuclei Adipose
29 chr2:178160200-178160800 Flanking Active TSS Colon Smooth Muscle Colon
30 chr2:178160200-178160800 Enhancers Fetal Heart heart
31 chr2:178160200-178160800 Enhancers Fetal Intestine Large intestine
32 chr2:178160200-178160800 Active TSS Ovary ovary
33 chr2:178160200-178160800 Flanking Active TSS Osteobl bone
34 chr2:178160200-178161000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr2:178160200-178161000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr2:178160200-178161000 Active TSS Aorta Aorta
37 chr2:178160200-178161000 Enhancers Brain Cingulate Gyrus brain
38 chr2:178160200-178161000 Enhancers Fetal Lung lung
39 chr2:178160200-178161000 Enhancers HUVEC blood vessel
40 chr2:178160200-178161200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
41 chr2:178160200-178161200 Enhancers Brain Substantia Nigra brain
42 chr2:178160200-178161200 Enhancers Fetal Intestine Small intestine
43 chr2:178160200-178161200 Enhancers Rectal Smooth Muscle rectum
44 chr2:178160200-178161200 Enhancers A549 lung
45 chr2:178160200-178161400 Enhancers Stomach Mucosa stomach
46 chr2:178160200-178162200 Enhancers Breast Myoepithelial Primary Cells Breast
47 chr2:178160400-178160600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
48 chr2:178160400-178160600 Flanking Active TSS Brain Hippocampus Middle brain
49 chr2:178160400-178160600 Enhancers NHDF-Ad bronchial
50 chr2:178160400-178160800 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015