The 2.0 version of rSNPBase

Variant report

Variant rs11889478
Chromosome Location chr2:178186159-178186160
allele A/C/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178147800-178187000 Weak transcription HSMM muscle
2 chr2:178147800-178190800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr2:178160400-178187200 Weak transcription Brain Angular Gyrus brain
4 chr2:178160800-178196200 Weak transcription Ovary ovary
5 chr2:178165800-178187200 Weak transcription Spleen Spleen
6 chr2:178166600-178187000 Weak transcription Fetal Muscle Trunk muscle
7 chr2:178167600-178187000 Weak transcription Left Ventricle heart
8 chr2:178172400-178187200 Weak transcription Brain Cingulate Gyrus brain
9 chr2:178175200-178187000 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr2:178175200-178203000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
11 chr2:178175400-178186600 Weak transcription Primary neutrophils fromperipheralblood blood
12 chr2:178175600-178191200 Weak transcription Primary T helper cells fromperipheralblood blood
13 chr2:178175600-178191600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr2:178175600-178191800 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr2:178175800-178187000 Weak transcription Dnd41 blood
16 chr2:178175800-178191000 Weak transcription Primary T helper naive cells fromperipheralblood blood
17 chr2:178176200-178191600 Weak transcription Thymus Thymus
18 chr2:178176400-178191400 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr2:178178600-178187200 Weak transcription Gastric stomach
20 chr2:178178600-178191200 Weak transcription Aorta Aorta
21 chr2:178179000-178187200 Weak transcription Primary B cells from cord blood blood
22 chr2:178179200-178196600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr2:178179600-178187200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr2:178179800-178186800 Weak transcription Brain Anterior Caudate brain
25 chr2:178179800-178189400 Weak transcription HSMMtube muscle
26 chr2:178179800-178190000 Weak transcription Muscle Satellite Cultured Cells --
27 chr2:178179800-178191800 Weak transcription K562 blood
28 chr2:178179800-178196800 Weak transcription Fetal Brain Female brain
29 chr2:178179800-178196800 Weak transcription Osteobl bone
30 chr2:178180400-178186400 Weak transcription Brain Substantia Nigra brain
31 chr2:178180400-178186800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr2:178180400-178187200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr2:178180400-178187200 Weak transcription Fetal Muscle Leg muscle
34 chr2:178180400-178196400 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr2:178180600-178187000 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr2:178180800-178196400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr2:178181000-178187000 Weak transcription Fetal Kidney kidney
38 chr2:178181200-178187200 Weak transcription Esophagus oesophagus
39 chr2:178182000-178190000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr2:178182000-178192000 Weak transcription Primary T cells fromperipheralblood blood
41 chr2:178182400-178196800 Weak transcription Pancreatic Islets Pancreatic Islet
42 chr2:178182800-178187000 Weak transcription Fetal Intestine Large intestine
43 chr2:178182800-178187000 Weak transcription Stomach Smooth Muscle stomach
44 chr2:178182800-178196600 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr2:178183000-178187000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr2:178183000-178187200 Weak transcription Skeletal Muscle Female skeletal muscle
47 chr2:178183200-178186400 Weak transcription HMEC breast
48 chr2:178183200-178186600 Weak transcription Fetal Intestine Small intestine
49 chr2:178183200-178187000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr2:178183200-178187000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015