The 2.0 version of rSNPBase

Variant report

Variant rs7573583
Chromosome Location chr2:178151405-178151406
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178131600-178154800 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr2:178139600-178154800 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr2:178145000-178151600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
4 chr2:178145000-178160200 Weak transcription Adipose Nuclei Adipose
5 chr2:178145600-178160200 Weak transcription Aorta Aorta
6 chr2:178146600-178154600 Weak transcription Spleen Spleen
7 chr2:178146600-178180400 Weak transcription Esophagus oesophagus
8 chr2:178146800-178154800 Weak transcription Monocytes-CD14+_RO01746 blood
9 chr2:178147400-178160000 Weak transcription Fetal Adrenal Gland Adrenal Gland
10 chr2:178147400-178160200 Weak transcription Brain Inferior Temporal Lobe brain
11 chr2:178147600-178160400 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr2:178147800-178152000 Enhancers Fetal Heart heart
13 chr2:178147800-178152400 Weak transcription Brain Cingulate Gyrus brain
14 chr2:178147800-178152600 Weak transcription Brain Anterior Caudate brain
15 chr2:178147800-178152600 Weak transcription Brain Substantia Nigra brain
16 chr2:178147800-178154800 Weak transcription Lung lung
17 chr2:178147800-178163000 Weak transcription Hela-S3 cervix
18 chr2:178147800-178187000 Weak transcription HSMM muscle
19 chr2:178147800-178190800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr2:178148000-178151600 Weak transcription Stomach Smooth Muscle stomach
21 chr2:178148000-178152200 Weak transcription GM12878-XiMat blood
22 chr2:178148000-178152600 Weak transcription Fetal Muscle Leg muscle
23 chr2:178148400-178155400 Weak transcription Liver Liver
24 chr2:178148600-178151800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr2:178148600-178154800 Weak transcription Duodenum Mucosa Duodenum
26 chr2:178148800-178154400 Weak transcription Primary monocytes fromperipheralblood blood
27 chr2:178148800-178160000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr2:178148800-178160200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr2:178149000-178152600 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr2:178149000-178160200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr2:178149400-178153200 Enhancers Ovary ovary
32 chr2:178150000-178151600 Enhancers HMEC breast
33 chr2:178150000-178151800 Enhancers Skeletal Muscle Female skeletal muscle
34 chr2:178150000-178152800 Enhancers Skeletal Muscle Male skeletal muscle
35 chr2:178150000-178153200 Enhancers Breast Myoepithelial Primary Cells Breast
36 chr2:178150000-178154600 Weak transcription Primary T cells from cord blood blood
37 chr2:178150200-178160200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr2:178150200-178160200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr2:178150400-178156400 Weak transcription Primary neutrophils fromperipheralblood blood
40 chr2:178150600-178152000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr2:178150800-178151800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr2:178151000-178154400 Weak transcription Primary hematopoietic stem cells short term culture blood
43 chr2:178151200-178152200 Strong transcription Brain Hippocampus Middle brain
44 chr2:178151200-178152600 Strong transcription Primary hematopoietic stem cells blood
45 chr2:178151200-178153400 Weak transcription HSMMtube muscle
46 chr2:178151400-178152600 Weak transcription Stomach Mucosa stomach
47 chr2:178151400-178154400 Weak transcription Small Intestine intestine
48 chr2:178151400-178157600 Weak transcription Fetal Intestine Small intestine
49 chr2:178151400-178157600 Weak transcription HepG2 liver
50 chr2:178151400-178167200 Weak transcription Left Ventricle heart

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Last update: Aug 31, 2015