Variant report

Variant	rs6754660
Chromosome Location	chr2:178220864-178220865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:178220224..178223052-chr2:178258523..178261393,2	K562	blood:
2	chr2:178220132..178221917-chr2:178353594..178356359,2	K562	blood:
3	chr2:178220224..178223061-chr2:178258523..178262241,3	K562	blood:
4	chr2:178220531..178222104-chr2:178224276..178225809,2	K562	blood:
5	chr2:178220773..178223072-chr20:46305174..46307392,2	MCF-7	breast:
6	chr2:178075182..178078093-chr2:178220337..178222693,2	MCF-7	breast:
7	chr2:178219756..178221860-chr2:178226806..178229006,2	K562	blood:
8	chr2:178131203..178132788-chr2:178220664..178222429,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196562	Chromatin interaction
ENSG00000255438	Chromatin interaction
ENSG00000170144	Chromatin interaction
ENSG00000263721	Chromatin interaction
ENSG00000229337	Chromatin interaction

Extended variants
information (count: 196 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:195)

rs_ID	r²[population]
rs10172305	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10173008	1.00[ASN][1000 genomes]
rs10173172	1.00[ASN][1000 genomes]
rs10176724	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179735	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10180514	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs10184488	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10190306	1.00[CEU][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10194452	1.00[CEU][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10196753	1.00[ASN][1000 genomes]
rs10196915	1.00[ASN][1000 genomes]
rs10208055	0.83[EUR][1000 genomes]
rs10497504	0.84[CEU][hapmap];0.81[YRI][hapmap]
rs10497505	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10497506	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10497509	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10497510	1.00[ASN][1000 genomes]
rs10754987	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10754988	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10803911	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10803912	0.84[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.86[MKK][hapmap]
rs10930785	0.85[GIH][hapmap]
rs10930786	1.00[ASN][1000 genomes]
rs10930788	0.91[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10930789	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930790	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10930791	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10930793	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10930796	0.91[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs10930797	0.81[AFR][1000 genomes]
rs11694988	0.93[YRI][hapmap]
rs11889478	1.00[ASN][1000 genomes]
rs11889488	0.81[AFR][1000 genomes]
rs11891003	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12468046	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12478545	1.00[CEU][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs12612957	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12621156	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693118	1.00[ASN][1000 genomes]
rs12693119	1.00[ASN][1000 genomes]
rs12693121	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes]
rs12987686	1.00[CHD][hapmap]
rs12988366	0.92[GIH][hapmap];0.84[LWK][hapmap];0.92[MKK][hapmap];0.93[YRI][hapmap]
rs12997516	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13007779	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13431105	0.81[AFR][1000 genomes]
rs1345138	0.84[CEU][hapmap];0.81[YRI][hapmap]
rs1348851	0.92[GIH][hapmap];0.83[LWK][hapmap];0.92[MKK][hapmap];0.93[YRI][hapmap]
rs1348852	0.91[CEU][hapmap];0.92[GIH][hapmap];0.84[LWK][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs1349762	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.91[LWK][hapmap];0.85[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374438	0.84[CEU][hapmap];0.81[YRI][hapmap]
rs1377491	1.00[ASN][1000 genomes]
rs1446837	0.91[CEU][hapmap];0.92[GIH][hapmap];0.81[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.80[EUR][1000 genomes]
rs1446838	0.91[CEU][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs1453369	1.00[CEU][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453376	1.00[ASN][1000 genomes]
rs1463287	1.00[ASN][1000 genomes]
rs1463288	1.00[ASN][1000 genomes]
rs1466208	1.00[ASN][1000 genomes]
rs1530965	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1545363	1.00[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1551287	1.00[ASN][1000 genomes]
rs1551288	1.00[ASN][1000 genomes]
rs1551289	1.00[ASN][1000 genomes]
rs1551290	1.00[ASN][1000 genomes]
rs1584806	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1597959	1.00[ASN][1000 genomes]
rs17326999	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs17398864	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17648502	1.00[ASN][1000 genomes]
rs1852530	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs1867905	0.84[CEU][hapmap];0.81[YRI][hapmap]
rs1869357	1.00[ASN][1000 genomes]
rs1901823	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1901828	1.00[ASN][1000 genomes]
rs1973045	1.00[ASN][1000 genomes]
rs1979059	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2044493	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2084966	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2084967	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2100395	0.85[EUR][1000 genomes]
rs2123641	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2123643	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123644	1.00[ASN][1000 genomes]
rs2123645	1.00[ASN][1000 genomes]
rs2166556	0.84[EUR][1000 genomes]
rs2166557	0.81[EUR][1000 genomes]
rs2167902	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2167903	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs2167904	1.00[ASN][1000 genomes]
rs2178017	0.84[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.92[MKK][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs2218575	0.84[CEU][hapmap];0.81[YRI][hapmap]
rs2293475	0.84[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.86[MKK][hapmap];0.81[YRI][hapmap]
rs2364846	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364847	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs2364849	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364850	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364851	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs2364852	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2365616	0.81[AFR][1000 genomes]
rs2444563	1.00[ASN][1000 genomes]
rs2444564	1.00[ASN][1000 genomes]
rs2464655	1.00[ASN][1000 genomes]
rs2602527	1.00[ASN][1000 genomes]
rs2602528	1.00[ASN][1000 genomes]
rs2695315	1.00[CHD][hapmap]
rs2706143	1.00[ASN][1000 genomes]
rs2706144	1.00[ASN][1000 genomes]
rs2706145	1.00[ASN][1000 genomes]
rs2706146	1.00[ASN][1000 genomes]
rs2706150	1.00[ASN][1000 genomes]
rs2706153	1.00[ASN][1000 genomes]
rs2706154	1.00[ASN][1000 genomes]
rs2706155	1.00[ASN][1000 genomes]
rs2706156	1.00[ASN][1000 genomes]
rs2706157	1.00[ASN][1000 genomes]
rs2706158	1.00[ASN][1000 genomes]
rs2706162	1.00[ASN][1000 genomes]
rs2706163	1.00[ASN][1000 genomes]
rs2886194	1.00[CEU][hapmap]
rs3754989	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3813260	1.00[CEU][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3952496	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4144278	0.84[CEU][hapmap];0.81[YRI][hapmap]
rs4243389	0.84[CEU][hapmap];0.81[YRI][hapmap]
rs4308151	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4335983	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4350784	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4402804	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4585065	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4893826	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4893827	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4893829	0.84[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.86[MKK][hapmap];0.81[YRI][hapmap]
rs4893933	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4893940	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4893942	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4893943	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4893955	0.91[CEU][hapmap];0.92[GIH][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs4893956	0.84[CEU][hapmap];0.81[YRI][hapmap]
rs56951837	1.00[ASN][1000 genomes]
rs6433661	1.00[ASN][1000 genomes]
rs6433662	1.00[ASN][1000 genomes]
rs6433664	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6433666	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6433672	0.84[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.91[LWK][hapmap];0.92[MKK][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs6433674	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6433675	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6433676	1.00[CEU][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6433677	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6710109	0.84[CEU][hapmap];0.81[YRI][hapmap]
rs6715365	1.00[CEU][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6717457	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6719114	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6719278	1.00[ASN][1000 genomes]
rs6720483	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6721168	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6723014	0.84[CEU][hapmap];0.86[YRI][hapmap]
rs6725096	0.81[EUR][1000 genomes]
rs6725331	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs6732113	1.00[ASN][1000 genomes]
rs6732250	1.00[CEU][hapmap];0.92[GIH][hapmap];0.81[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6732256	1.00[ASN][1000 genomes]
rs6737342	0.82[CEU][hapmap]
rs6739792	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740092	1.00[CEU][hapmap];0.92[TSI][hapmap]
rs6741974	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6744488	1.00[CEU][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs6752528	0.82[CEU][hapmap]
rs6752779	0.91[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs6759567	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72946169	1.00[ASN][1000 genomes]
rs7559715	1.00[ASN][1000 genomes]
rs7566603	1.00[ASN][1000 genomes]
rs7566686	1.00[ASN][1000 genomes]
rs7568452	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7570297	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7573334	1.00[ASN][1000 genomes]
rs7573583	1.00[ASN][1000 genomes]
rs7582179	0.91[CEU][hapmap]
rs7585952	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7588049	0.84[CEU][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];0.81[YRI][hapmap]
rs7588444	1.00[ASN][1000 genomes]
rs7589927	1.00[CEU][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7594073	0.91[ASW][hapmap];0.91[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7601132	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7604299	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7604668	1.00[CEU][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs7608135	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9288001	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935426	0.84[CEU][hapmap];0.81[YRI][hapmap]
rs952034	1.00[ASN][1000 genomes]
rs9789580	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9917193	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9917333	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9941681	1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3051	chr2:178193436-178239394	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6754660	AGPS	Cis_1M	lymphoblastoid	RTeQTL
rs6754660	LOC100130691	cis	intralobular white matter	BrainEAC
rs6754660	LOC100130691	cis	brain	BrainEAC

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178203400-178244400	Weak transcription	HSMM	muscle
2	chr2:178203800-178221600	Weak transcription	A549	lung
3	chr2:178212000-178224400	Weak transcription	Fetal Heart	heart
4	chr2:178214400-178228200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:178214800-178221400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:178216800-178225400	Weak transcription	Ovary	ovary
7	chr2:178218000-178225200	Weak transcription	HSMMtube	muscle
8	chr2:178218000-178256200	Weak transcription	HepG2	liver
9	chr2:178218200-178221200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:178218400-178224200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr2:178218400-178225000	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:178219000-178221400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr2:178219200-178233600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:178219400-178224000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:178219400-178224000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:178219800-178221000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:178220200-178221000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:178220200-178221000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr2:178220200-178221200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:178220200-178221600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:178220200-178221800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr2:178220200-178223200	Enhancers	Brain Cingulate Gyrus	brain
23	chr2:178220400-178221200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:178220400-178221200	Enhancers	Brain Angular Gyrus	brain
25	chr2:178220400-178221400	Weak transcription	Brain Anterior Caudate	brain
26	chr2:178220400-178221600	Enhancers	Brain Hippocampus Middle	brain
27	chr2:178220600-178221400	Weak transcription	Brain Substantia Nigra	brain

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