Variant report

Variant	rs1466208
Chromosome Location	chr2:178160931-178160932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr2:178160785-178161195	Hela-S3	cervix:	n/a	chr2:178160994-178161013
2	CTCF	chr2:178160900-178161050	Hela-S3	cervix:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
3	RFX5	chr2:178160855-178161169	Hela-S3	cervix:	n/a	n/a
4	CTCF	chr2:178160897-178161126	Hela-S3	cervix:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
5	MAFK	chr2:178160810-178160998	K562	blood:	n/a	n/a
6	CTCF	chr2:178160840-178160990	HAc	cerebellar:	n/a	n/a
7	FOXA1	chr2:178160832-178161066	T-47D	breast:	n/a	n/a
8	RAD21	chr2:178160876-178161245	MCF-7	breast:	n/a	chr2:178160994-178161013
9	CTCF	chr2:178160914-178161105	GM13977	blood:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
10	FOXA2	chr2:178160807-178161105	HepG2	liver:	n/a	n/a
11	MAZ	chr2:178160883-178161037	K562	blood:	n/a	n/a
12	RAD21	chr2:178160658-178161353	A549	lung:	n/a	chr2:178160994-178161013
13	CTCF	chr2:178160900-178161050	AG04450	lung:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
14	SMC3	chr2:178160889-178161127	K562	blood:	n/a	n/a
15	CTCF	chr2:178160826-178161067	A549	lung:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
16	CTCF	chr2:178160920-178161070	NHDF-neo	bronchial:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
17	CTCF	chr2:178160852-178161172	MCF-7	breast:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
18	CTCF	chr2:178160920-178161070	HRE	kidney:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
19	IRF1	chr2:178160840-178161159	K562	blood:	n/a	chr2:178160871-178160885
20	CTCF	chr2:178160920-178161070	GM06990	blood:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
21	CTCF	chr2:178160920-178161070	SK-N-SH_RA	brain:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
22	FOXA1	chr2:178160760-178161203	HepG2	liver:	n/a	n/a
23	SMC3	chr2:178160821-178161219	Hela-S3	cervix:	n/a	n/a
24	RAD21	chr2:178160673-178161286	HCT-116	colon:	n/a	chr2:178160994-178161013
25	CTCF	chr2:178160912-178161113	Medullo	brain:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
26	CTCF	chr2:178160900-178161050	HPAF	blood vessel:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
27	SMC3	chr2:178160788-178161260	GM12878	blood:	n/a	n/a
28	CTCF	chr2:178160809-178161198	GM12878	blood:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
29	CTCF	chr2:178160900-178161050	GM12878	blood:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
30	RAD21	chr2:178160709-178161287	HCT-116	colon:	n/a	chr2:178160994-178161013
31	CTCF	chr2:178160920-178161070	GM12873	blood:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
32	RAD21	chr2:178160866-178161146	HepG2	liver:	n/a	chr2:178160994-178161013
33	CTCF	chr2:178160928-178161104	GM20000	blood:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
34	CTCF	chr2:178160920-178161070	AoAF	blood vessel:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
35	CTCF	chr2:178160873-178161157	Spleen_OC	spleen:	n/a	chr2:178160997-178161013 chr2:178160991-178161012 chr2:178160996-178161014
36	CTCF	chr2:178160923-178161108	LNCaP	prostate:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
37	CTCF	chr2:178160901-178161105	LNCaP	prostate:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
38	CTCF	chr2:178160880-178161030	HPF	lung:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
39	ARID3A	chr2:178160898-178161107	K562	blood:	n/a	n/a
40	CTCF	chr2:178160773-178161284	HCT-116	colon:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
41	CTCF	chr2:178160920-178161070	AG10803	skin:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
42	RAD21	chr2:178160696-178161307	HepG2	liver:	n/a	chr2:178160994-178161013
43	RAD21	chr2:178160832-178161102	K562	blood:	n/a	chr2:178160994-178161013
44	CTCF	chr2:178160840-178160990	AG09309	skin:	n/a	n/a
45	CTCF	chr2:178160900-178161050	GM06990	blood:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
46	TBL1XR1	chr2:178160760-178161149	K562	blood:	n/a	n/a
47	RCOR1	chr2:178160832-178161155	K562	blood:	n/a	n/a
48	CTCF	chr2:178160860-178161010	GM12866	blood:	n/a	n/a
49	CTCF	chr2:178160826-178161118	K562	blood:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014
50	CTCF	chr2:178160920-178161070	Caco-2	colon:	n/a	chr2:178160991-178161012 chr2:178160997-178161013 chr2:178160996-178161014

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:178160898-178160948	SKMC	muscle:	n/a
2	chr2:178160898-178160948	HRE	kidney:	n/a
3	chr2:178160898-178160948	IMR90	lung:	fetal
4	chr2:178160898-178160948	AG04450	lung:	fetal
5	chr2:178160898-178160948	PrEC	prostate:	n/a
6	chr2:178160898-178160948	Caco-2	colon:	n/a
7	chr2:178160898-178160948	HUVEC	blood vessel:	n/a
8	chr2:178160898-178160948	NHBE	bronchial:	n/a
9	chr2:178160898-178160948	HCF	heart:	n/a
10	chr2:178160898-178160948	HMEC	breast:	n/a
11	chr2:178160898-178160948	H1-hESC	embryonic stem cell:	embryo
12	chr2:178160898-178160948	HEK293	kidney:	embryo
13	chr2:178160898-178160948	HRCEpiC	kidney:	n/a
14	chr2:178160898-178160948	NHDF-neo	bronchial:	n/a
15	chr2:178160898-178160948	HCT-116	colon:	n/a
16	chr2:178160898-178160948	MCF-7	breast:	n/a
17	chr2:178160898-178160948	SK-N-SH_RA	brain:	n/a
18	chr2:178160898-178160948	Hepatocyte	liver:	n/a
19	chr2:178160898-178160948	HPAEpiC	pulmonary alveolar:	n/a
20	chr2:178160898-178160948	GM19239	blood:	n/a
21	chr2:178160898-178160948	AG10803	skin:	n/a
22	chr2:178160898-178160948	RPTEC	kidney:	n/a
23	chr2:178160898-178160948	HNPCEpiC	eye:	n/a
24	chr2:178160898-178160948	A549	lung:	n/a
25	chr2:178160898-178160948	PANC-1	pancreas:	n/a
26	chr2:178160898-178160948	NB4	blood:	n/a
27	chr2:178160898-178160948	GM12891	blood:	n/a
28	chr2:178160898-178160948	SAEC	small airway:	n/a
29	chr2:178160898-178160948	NT2-D1	testis:	n/a
30	chr2:178160898-178160948	HAEpiC	amniotic membrane:	n/a
31	chr2:178160898-178160948	ovcar-3	ovarian:	n/a
32	chr2:178160898-178160948	U87	brain:	n/a
33	chr2:178160898-178160948	AG09309	skin:	n/a
34	chr2:178160898-178160948	AG09319	gingival:	n/a
35	chr2:178160898-178160948	PFSK-1	brain:	n/a
36	chr2:178160898-178160948	HCPEpiC	choroid plexus:	n/a
37	chr2:178160898-178160948	Hela-S3	cervix:	n/a
38	chr2:178160898-178160948	HEEpiC	esophagus:	n/a
39	chr2:178160898-178160948	BE2_C	brain:	n/a
40	chr2:178160898-178160948	HL-60	blood:	n/a
41	chr2:178160898-178160948	NH-A	brain:	n/a
42	chr2:178160898-178160948	HepG2	liver:	n/a
43	chr2:178160898-178160948	BJ	skin:	n/a
44	chr2:178160898-178160948	LNCaP	prostate:	n/a
45	chr2:178160898-178160948	GM06990	blood:	n/a
46	chr2:178160898-178160948	K562	blood:	n/a
47	chr2:178160898-178160948	CMK	blood:	n/a
48	chr2:178160898-178160948	HIPEpiC	eye:	n/a
49	chr2:178160898-178160948	AoSMC	blood vessel:	n/a
50	chr2:178160898-178160948	GM12892	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:178154268..178156723-chr2:178159344..178161068,2	K562	blood:
2	chr2:178129670..178130291-chr2:178160535..178161080,2	MCF-7	breast:
3	chr2:178159535..178161054-chr2:178165959..178168725,2	K562	blood:
4	chr2:178029134..178029966-chr2:178160497..178161141,3	K562	blood:
5	chr2:178128005..178131104-chr2:178160409..178162642,3	MCF-7	breast:
6	chr2:178127315..178131627-chr2:178155428..178160936,10	MCF-7	breast:
7	chr2:178029045..178029655-chr2:178160642..178161194,2	MCF-7	breast:
8	chr2:178128200..178128911-chr2:178160265..178160954,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271825	TF binding region
ENSG00000271825	CpG island
ENSG00000222043	Chromatin interaction
ENSG00000116044	Chromatin interaction
ENSG00000236501	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10172305	1.00[ASN][1000 genomes]
rs10173008	1.00[ASN][1000 genomes]
rs10173172	1.00[ASN][1000 genomes]
rs10176724	1.00[ASN][1000 genomes]
rs10179735	0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs10179975	0.94[CEU][hapmap];0.95[TSI][hapmap]
rs10196753	1.00[ASN][1000 genomes]
rs10196915	1.00[ASN][1000 genomes]
rs10207932	0.94[CEU][hapmap];0.95[TSI][hapmap]
rs10497510	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930784	0.94[CEU][hapmap];0.95[TSI][hapmap]
rs10930785	0.94[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap]
rs10930786	1.00[ASN][1000 genomes]
rs10930789	1.00[ASN][1000 genomes]
rs11889478	1.00[ASN][1000 genomes]
rs12621156	1.00[ASN][1000 genomes]
rs12623239	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12693118	1.00[ASN][1000 genomes]
rs12693119	1.00[ASN][1000 genomes]
rs12987686	0.94[CEU][hapmap];0.95[TSI][hapmap]
rs13001890	1.00[CEU][hapmap]
rs13002088	1.00[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs1349762	1.00[ASN][1000 genomes]
rs1377491	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453369	1.00[ASN][1000 genomes]
rs1453376	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs1463287	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463288	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551287	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551288	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551289	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551290	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584806	1.00[ASN][1000 genomes]
rs1597958	0.82[EUR][1000 genomes]
rs1597959	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17648502	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869357	1.00[ASN][1000 genomes]
rs1901828	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973044	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1973045	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973047	0.82[EUR][1000 genomes]
rs2084966	1.00[ASN][1000 genomes]
rs2123641	1.00[ASN][1000 genomes]
rs2123643	1.00[ASN][1000 genomes]
rs2123644	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123645	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167903	1.00[ASN][1000 genomes]
rs2167904	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364733	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2364846	1.00[ASN][1000 genomes]
rs2364847	0.80[ASW][hapmap];0.94[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs2364848	0.94[CEU][hapmap];0.95[TSI][hapmap]
rs2364849	1.00[ASN][1000 genomes]
rs2364850	1.00[ASN][1000 genomes]
rs2444563	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2444564	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2464655	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602527	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602528	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706143	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706144	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706145	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706146	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706147	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs2706150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706153	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706154	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706155	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706156	1.00[CEU][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706157	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706158	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706160	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2706162	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706163	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3952496	1.00[ASN][1000 genomes]
rs4130304	0.94[CEU][hapmap]
rs4350784	1.00[ASN][1000 genomes]
rs4893826	1.00[ASN][1000 genomes]
rs4893827	1.00[ASN][1000 genomes]
rs4893930	0.94[CEU][hapmap]
rs4893933	1.00[ASN][1000 genomes]
rs4893955	0.86[GIH][hapmap]
rs56951837	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6414095	1.00[CEU][hapmap];0.95[TSI][hapmap]
rs6433661	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433662	1.00[ASN][1000 genomes]
rs6719278	1.00[ASN][1000 genomes]
rs6721168	1.00[ASN][1000 genomes]
rs6732113	1.00[ASN][1000 genomes]
rs6732256	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs6739792	1.00[ASN][1000 genomes]
rs6741974	1.00[ASN][1000 genomes]
rs6754660	1.00[ASN][1000 genomes]
rs72946169	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559715	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566603	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566686	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7573334	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7573583	1.00[CEU][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7575328	0.94[CEU][hapmap]
rs7588444	1.00[ASN][1000 genomes]
rs7604299	1.00[ASN][1000 genomes]
rs9288001	1.00[ASN][1000 genomes]
rs952034	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9917333	1.00[ASN][1000 genomes]
rs9941681	0.89[CEU][hapmap];0.86[GIH][hapmap];0.91[TSI][hapmap];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1466208	DKFZp451M2119	cis	multi-tissue	Pritchard
rs1466208	LOC100130691	cis	parietal	SCAN
rs1466208	OSBPL6	cis	cerebellum	SCAN

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178146600-178180400	Weak transcription	Esophagus	oesophagus
2	chr2:178147800-178163000	Weak transcription	Hela-S3	cervix
3	chr2:178147800-178187000	Weak transcription	HSMM	muscle
4	chr2:178147800-178190800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:178151400-178167200	Weak transcription	Left Ventricle	heart
6	chr2:178151400-178179400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr2:178152000-178171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:178152800-178178200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:178155600-178174000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr2:178155800-178166600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:178155800-178167000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:178155800-178167400	Weak transcription	Primary B cells from cord blood	blood
13	chr2:178155800-178185200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr2:178156400-178172000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr2:178157800-178171600	Weak transcription	Primary T cells from cord blood	blood
16	chr2:178160000-178161000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:178160000-178161200	Enhancers	HepG2	liver
18	chr2:178160000-178161400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr2:178160200-178161000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:178160200-178161000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr2:178160200-178161000	Active TSS	Aorta	Aorta
22	chr2:178160200-178161000	Enhancers	Brain Cingulate Gyrus	brain
23	chr2:178160200-178161000	Enhancers	Fetal Lung	lung
24	chr2:178160200-178161000	Enhancers	HUVEC	blood vessel
25	chr2:178160200-178161200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr2:178160200-178161200	Enhancers	Brain Substantia Nigra	brain
27	chr2:178160200-178161200	Enhancers	Fetal Intestine Small	intestine
28	chr2:178160200-178161200	Enhancers	Rectal Smooth Muscle	rectum
29	chr2:178160200-178161200	Enhancers	A549	lung
30	chr2:178160200-178161400	Enhancers	Stomach Mucosa	stomach
31	chr2:178160200-178162200	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr2:178160400-178161000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr2:178160400-178161000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr2:178160400-178161000	Flanking Active TSS	Liver	Liver
35	chr2:178160400-178161000	Active TSS	Stomach Smooth Muscle	stomach
36	chr2:178160400-178161200	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr2:178160400-178161200	Enhancers	Duodenum Mucosa	Duodenum
38	chr2:178160400-178161200	Enhancers	GM12878-XiMat	blood
39	chr2:178160400-178187200	Weak transcription	Brain Angular Gyrus	brain
40	chr2:178160600-178161000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr2:178160600-178161000	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr2:178160600-178161000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr2:178160600-178161000	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr2:178160600-178161000	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr2:178160600-178161000	Enhancers	NH-A	brain
46	chr2:178160600-178161400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr2:178160600-178161400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr2:178160600-178163200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr2:178160600-178166800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr2:178160800-178161000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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