Variant report

Variant	rs1901828
Chromosome Location	chr2:178166886-178166887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178159535..178161054-chr2:178165959..178168725,2	K562	blood:
2	chr2:178162817..178164821-chr2:178165329..178167343,2	K562	blood:

Extended variants
information (count: 106 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10172305	1.00[ASN][1000 genomes]
rs10173008	1.00[ASN][1000 genomes]
rs10173172	1.00[ASN][1000 genomes]
rs10176724	1.00[ASN][1000 genomes]
rs10179735	0.94[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs10179975	0.94[CEU][hapmap];0.95[TSI][hapmap]
rs10196753	1.00[ASN][1000 genomes]
rs10196915	1.00[ASN][1000 genomes]
rs10207932	0.94[CEU][hapmap];0.95[TSI][hapmap]
rs10497510	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930784	0.94[CEU][hapmap];0.95[TSI][hapmap]
rs10930785	0.94[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap]
rs10930786	1.00[ASN][1000 genomes]
rs10930789	1.00[ASN][1000 genomes]
rs11889478	1.00[ASN][1000 genomes]
rs12621156	1.00[ASN][1000 genomes]
rs12623239	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12693118	1.00[ASN][1000 genomes]
rs12693119	1.00[ASN][1000 genomes]
rs12987686	0.94[CEU][hapmap];0.95[TSI][hapmap]
rs13001890	1.00[CEU][hapmap]
rs13002088	1.00[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs1349762	1.00[ASN][1000 genomes]
rs1377491	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453369	1.00[ASN][1000 genomes]
rs1453376	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs1463287	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463288	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466208	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551287	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551288	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551289	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551290	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584806	1.00[ASN][1000 genomes]
rs1597958	0.82[EUR][1000 genomes]
rs1597959	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17648502	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869357	1.00[ASN][1000 genomes]
rs1973044	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1973045	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973047	0.82[EUR][1000 genomes]
rs2084966	1.00[ASN][1000 genomes]
rs2123641	1.00[ASN][1000 genomes]
rs2123643	1.00[ASN][1000 genomes]
rs2123644	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123645	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167903	1.00[ASN][1000 genomes]
rs2167904	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364733	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2364846	1.00[ASN][1000 genomes]
rs2364847	0.80[ASW][hapmap];0.94[CEU][hapmap];0.82[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs2364848	0.94[CEU][hapmap];0.95[TSI][hapmap]
rs2364849	1.00[ASN][1000 genomes]
rs2364850	1.00[ASN][1000 genomes]
rs2444563	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2444564	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2464655	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602527	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602528	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706143	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706144	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706145	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706146	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706147	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2706150	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706153	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706154	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706155	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706156	1.00[CEU][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706157	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706158	1.00[CEU][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706160	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2706162	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706163	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3952496	1.00[ASN][1000 genomes]
rs4130304	0.94[CEU][hapmap]
rs4350784	1.00[ASN][1000 genomes]
rs4893826	1.00[ASN][1000 genomes]
rs4893827	1.00[ASN][1000 genomes]
rs4893930	0.94[CEU][hapmap]
rs4893933	1.00[ASN][1000 genomes]
rs4893955	0.86[GIH][hapmap]
rs56951837	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6414095	1.00[CEU][hapmap];0.95[TSI][hapmap]
rs6433661	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433662	1.00[ASN][1000 genomes]
rs6719278	1.00[ASN][1000 genomes]
rs6721168	1.00[ASN][1000 genomes]
rs6732113	1.00[ASN][1000 genomes]
rs6732256	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs6739792	1.00[ASN][1000 genomes]
rs6741974	1.00[ASN][1000 genomes]
rs6754660	1.00[ASN][1000 genomes]
rs72946169	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559715	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566603	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566686	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7573334	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7573583	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7575328	0.94[CEU][hapmap]
rs7588444	1.00[ASN][1000 genomes]
rs7604299	1.00[ASN][1000 genomes]
rs9288001	1.00[ASN][1000 genomes]
rs952034	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9917333	1.00[ASN][1000 genomes]
rs9941681	0.89[CEU][hapmap];0.86[GIH][hapmap];0.91[TSI][hapmap];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1901828	LOC100130691	cis	parietal	SCAN
rs1901828	OSBPL6	cis	cerebellum	SCAN
rs1901828	DKFZp451M2119	cis	multi-tissue	Pritchard

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178146600-178180400	Weak transcription	Esophagus	oesophagus
2	chr2:178147800-178187000	Weak transcription	HSMM	muscle
3	chr2:178147800-178190800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:178151400-178167200	Weak transcription	Left Ventricle	heart
5	chr2:178151400-178179400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr2:178152000-178171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:178152800-178178200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr2:178155600-178174000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:178155800-178167000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:178155800-178167400	Weak transcription	Primary B cells from cord blood	blood
11	chr2:178155800-178185200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr2:178156400-178172000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr2:178157800-178171600	Weak transcription	Primary T cells from cord blood	blood
14	chr2:178160400-178187200	Weak transcription	Brain Angular Gyrus	brain
15	chr2:178160800-178186000	Weak transcription	Adipose Nuclei	Adipose
16	chr2:178160800-178196200	Weak transcription	Ovary	ovary
17	chr2:178161200-178171200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:178163400-178168200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:178163400-178171400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:178163600-178177800	Weak transcription	HepG2	liver
21	chr2:178163600-178178200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:178165000-178174000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr2:178165200-178173800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr2:178165800-178187200	Weak transcription	Spleen	Spleen
25	chr2:178166600-178167800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:178166600-178187000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr2:178166800-178167600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr2:178166800-178169000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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