Variant report

Variant	rs10264273
Chromosome Location	chr7:104681214-104681215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104621330..104622455-chr7:104680668..104682176,5	MCF-7	breast:
2	chr7:104674502..104677461-chr7:104680943..104682648,2	K562	blood:
3	chr7:104679059..104683301-chr7:104684929..104688094,8	K562	blood:
4	chr7:104563436..104563948-chr7:104681191..104681853,2	MCF-7	breast:
5	chr7:104680385..104683301-chr7:104683670..104687526,4	K562	blood:
6	chr7:104675440..104678046-chr7:104679888..104682253,3	MCF-7	breast:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs1013016	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1019040	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10224526	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10231782	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10231975	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10241374	0.90[EUR][1000 genomes]
rs10242713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10244764	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10245589	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10245676	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10245796	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10249746	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10249965	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10253962	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10260346	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10261472	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10261573	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10268866	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10269027	0.81[EUR][1000 genomes]
rs10274607	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10276583	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10279486	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10279602	0.95[EUR][1000 genomes]
rs10280009	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10280752	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10808139	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10808140	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10953464	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10953466	0.87[EUR][1000 genomes]
rs10953467	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1143	0.83[ASN][1000 genomes]
rs11971732	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11973516	0.80[AMR][1000 genomes]
rs11976329	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11981399	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12171585	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12531424	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12532062	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12532456	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12534140	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12540007	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12667625	0.90[EUR][1000 genomes]
rs12671368	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12705297	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12705299	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13230660	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1859786	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1967301	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2011258	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2058711	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2214928	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2216107	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237602	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2237604	0.91[EUR][1000 genomes]
rs2237605	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2237606	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2237608	0.80[ASN][1000 genomes]
rs2240453	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2240454	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2240455	0.90[EUR][1000 genomes]
rs2240457	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2283016	0.83[EUR][1000 genomes]
rs2285532	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2299299	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28434158	0.90[EUR][1000 genomes]
rs28489493	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2891761	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3173872	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3213676	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3213741	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34202980	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34558707	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35418021	0.87[ASN][1000 genomes]
rs35780942	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3735377	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3815256	0.83[AMR][1000 genomes]
rs4730065	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4730067	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4730068	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4730069	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6466043	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6466045	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6466046	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67739707	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6952534	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6972229	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71562633	0.87[EUR][1000 genomes]
rs740297	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs740298	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs740300	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7780887	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7783812	0.81[EUR][1000 genomes]
rs7785197	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7800233	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7805792	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7810119	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7811349	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs875567	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs875568	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs916704	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs960437	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9641340	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9641341	0.90[EUR][1000 genomes]
rs999895	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases
2	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104656600-104681800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:104658600-104703800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:104658800-104681800	Weak transcription	Thymus	Thymus
4	chr7:104661800-104696000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:104665600-104681600	Weak transcription	NH-A	brain
6	chr7:104665600-104682200	Weak transcription	HMEC	breast
7	chr7:104665600-104682200	Weak transcription	HSMMtube	muscle
8	chr7:104666400-104681400	Weak transcription	Colonic Mucosa	Colon
9	chr7:104666800-104681600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:104668200-104685000	Weak transcription	HUVEC	blood vessel
11	chr7:104669600-104685000	Weak transcription	Esophagus	oesophagus
12	chr7:104670400-104684400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:104670400-104685000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:104671800-104681800	Weak transcription	Pancreas	Pancrea
15	chr7:104671800-104685000	Weak transcription	Aorta	Aorta
16	chr7:104673000-104685000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:104674800-104685000	Weak transcription	Right Ventricle	heart
18	chr7:104675000-104681800	Weak transcription	Fetal Intestine Large	intestine
19	chr7:104675000-104682000	Weak transcription	Fetal Muscle Leg	muscle
20	chr7:104675000-104684800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr7:104675000-104694200	Weak transcription	Spleen	Spleen
22	chr7:104675000-104694800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:104676200-104684800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:104676400-104687400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:104677000-104681800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:104677000-104682200	Weak transcription	Brain Germinal Matrix	brain
27	chr7:104677000-104682400	Weak transcription	Fetal Brain Male	brain
28	chr7:104677200-104681800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:104677200-104682400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr7:104677800-104682000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr7:104677800-104758200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:104678000-104682400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr7:104678000-104812200	Strong transcription	Dnd41	blood
34	chr7:104678200-104681400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr7:104678200-104684200	Strong transcription	K562	blood
36	chr7:104678200-104688400	Weak transcription	Gastric	stomach
37	chr7:104678400-104685000	Strong transcription	Primary B cells from peripheral blood	blood
38	chr7:104678400-104686800	Strong transcription	HSMM	muscle
39	chr7:104678600-104682600	Weak transcription	NHDF-Ad	bronchial
40	chr7:104678800-104681600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:104678800-104685000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr7:104679000-104681800	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr7:104679200-104681600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
44	chr7:104679200-104681800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:104679200-104681800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr7:104679200-104681800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr7:104679200-104682600	Enhancers	Brain Substantia Nigra	brain
48	chr7:104679200-104683600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
49	chr7:104679200-104684600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr7:104679400-104681600	Enhancers	Brain Anterior Caudate	brain

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