Variant report

Variant	rs2299299
Chromosome Location	chr7:104751419-104751420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104653314..104655530-chr7:104747419..104751659,3	K562	blood:
2	chr7:104748748..104753813-chr7:104754456..104758355,8	K562	blood:
3	chr7:104651239..104655549-chr7:104750511..104756006,6	K562	blood:
4	chr7:104746592..104748687-chr7:104749569..104752104,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SRPK2-5	chr7:104751151-104751635	NONHSAT122607

Variant related genes	Relation type
ENSG00000228393	Chromatin interaction
ENSG00000239569	Chromatin interaction
ENSG00000005483	Chromatin interaction
ENSG00000135250	Chromatin interaction

Extended variants
information (count: 145 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs1013016	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1019040	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10224526	0.80[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10231782	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10231975	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10241374	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[EUR][1000 genomes]
rs10242713	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10244764	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10245589	0.86[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.90[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10245676	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10245796	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10248422	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10248954	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10249746	0.83[EUR][1000 genomes]
rs10249965	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10252295	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10253962	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10260346	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10261472	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10261573	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10264273	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10268866	0.86[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10269027	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10274607	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10276583	0.85[CEU][hapmap];0.85[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs10279486	0.85[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10279602	0.89[EUR][1000 genomes]
rs10280009	0.82[EUR][1000 genomes]
rs10280470	0.81[ASW][hapmap];0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.94[TSI][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10280752	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10808139	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10808140	0.86[ASW][hapmap];0.85[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.91[LWK][hapmap];0.84[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10953464	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10953466	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10953467	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10953473	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs1143	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11520996	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11973516	0.84[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes]
rs11976329	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11981399	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12171585	0.82[EUR][1000 genomes]
rs12531424	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12532062	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12532456	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12534140	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12540007	0.93[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12667625	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12671368	0.86[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12705297	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12705299	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13230660	0.90[EUR][1000 genomes]
rs13237370	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13245298	0.84[AMR][1000 genomes]
rs17721991	0.85[CEU][hapmap];0.89[JPT][hapmap];0.87[TSI][hapmap]
rs1859786	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.95[ASN][1000 genomes]
rs1967301	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1978201	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs2011258	0.84[EUR][1000 genomes]
rs2058711	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2214928	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2216107	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2237602	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2237604	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2237605	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2237606	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.95[ASN][1000 genomes]
rs2237607	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2237608	0.95[ASN][1000 genomes]
rs2237609	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2237610	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2237615	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs2237616	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs2237617	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs2237618	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2237619	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2237620	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs2240453	0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2240454	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2240455	1.00[ASW][hapmap];0.93[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2240457	0.93[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2240465	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2283016	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2285532	0.86[EUR][1000 genomes]
rs2299297	0.86[ASW][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs2299313	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs2299320	0.85[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.87[TSI][hapmap]
rs2299326	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs2385542	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs28434158	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28489493	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2891761	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3173872	0.85[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs3213676	0.93[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3213741	0.86[EUR][1000 genomes]
rs34202980	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34558707	0.80[AMR][1000 genomes]
rs35418021	0.96[ASN][1000 genomes]
rs35780942	0.86[EUR][1000 genomes]
rs3735377	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3779208	0.80[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs3801283	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs3815256	1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4730065	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4730067	0.86[ASW][hapmap];0.85[CEU][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4730068	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4730069	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4730071	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6466043	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6466044	0.90[ASN][1000 genomes]
rs6466045	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6466046	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67739707	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6944847	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6952534	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6971241	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs6972229	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6973052	0.92[AFR][1000 genomes]
rs717352	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs725506	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs740297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs740298	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs740300	0.86[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7780887	0.86[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7783812	0.94[ASN][1000 genomes]
rs7785197	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7787448	0.94[ASN][1000 genomes]
rs7787558	0.91[AFR][1000 genomes]
rs7800233	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7805792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7808168	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7810119	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7811349	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8180737	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs875567	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs875568	0.81[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs916704	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs960437	0.81[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9641340	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9641341	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9641343	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs9641345	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs999895	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2299299	SRPK2	cis	parietal	SCAN
rs2299299	GLI3	trans	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104677800-104758200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:104678000-104812200	Strong transcription	Dnd41	blood
3	chr7:104681200-104758400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:104681200-104760400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr7:104685600-104759000	Strong transcription	Primary B cells from peripheral blood	blood
6	chr7:104701400-104758800	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr7:104702800-104758800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:104703600-104759000	Strong transcription	Fetal Intestine Large	intestine
9	chr7:104706000-104760200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:104712400-104758800	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:104722200-104759400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr7:104727800-104758200	Strong transcription	Fetal Thymus	thymus
13	chr7:104727800-104759200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:104727800-104759800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:104727800-104760400	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr7:104728000-104760200	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr7:104728200-104758400	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:104728200-104758400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr7:104728400-104756800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:104728400-104758400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:104728400-104758400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:104728600-104756000	Strong transcription	Fetal Muscle Trunk	muscle
23	chr7:104734800-104755200	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:104737000-104756000	Strong transcription	Duodenum Mucosa	Duodenum
25	chr7:104737000-104757800	Strong transcription	Adipose Nuclei	Adipose
26	chr7:104737800-104758800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr7:104738600-104758400	Strong transcription	Fetal Lung	lung
28	chr7:104738800-104760200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:104739000-104759200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr7:104739600-104755800	Strong transcription	HepG2	liver
31	chr7:104739800-104755600	Strong transcription	NH-A	brain
32	chr7:104739800-104757800	Strong transcription	HSMM	muscle
33	chr7:104740000-104758400	Strong transcription	NHDF-Ad	bronchial
34	chr7:104740200-104753200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:104740200-104759000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:104740200-104759400	Strong transcription	Primary B cells from cord blood	blood
37	chr7:104740400-104753800	Strong transcription	Fetal Muscle Leg	muscle
38	chr7:104740400-104756000	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr7:104740400-104756200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr7:104740400-104758200	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr7:104740400-104759200	Strong transcription	Primary T cells from cord blood	blood
42	chr7:104740400-104787400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:104740600-104756200	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr7:104740800-104756800	Strong transcription	K562	blood
45	chr7:104740800-104758400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr7:104740800-104760200	Strong transcription	HMEC	breast
47	chr7:104741200-104756000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr7:104741400-104757800	Strong transcription	HUVEC	blood vessel
49	chr7:104741600-104758600	Strong transcription	Placenta	Placenta
50	chr7:104741800-104756400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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