Variant report

Variant	rs6971241
Chromosome Location	chr7:104834182-104834183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 157 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs1013016	0.85[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs1019040	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs10224526	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs10224564	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10228503	0.83[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10230128	0.83[CEU][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs10230449	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10231975	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10233695	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10235252	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10240574	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10241374	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10242713	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs10244764	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10245589	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs10245676	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10245796	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10248422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10248954	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10249170	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10252295	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10253962	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs10255779	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10258841	0.83[CEU][hapmap];0.96[GIH][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.88[MKK][hapmap];0.87[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10259721	0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10261472	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10261573	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10261613	0.86[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];0.85[ASN][1000 genomes]
rs10261738	0.83[ASN][1000 genomes]
rs10261782	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10268866	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs10269027	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap]
rs10272634	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10276153	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10279486	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs10280336	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10280470	0.85[CEU][hapmap];0.81[CHB][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap]
rs10280752	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs10808139	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs10808140	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.94[TSI][hapmap]
rs10953464	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10953473	0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1143	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs11769318	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11769936	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11973516	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs11973742	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11973780	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11981399	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs12531424	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12532062	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12534140	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs12537761	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540007	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs12666949	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12669532	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12671368	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs12705305	0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13223001	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13237370	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13246886	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17721991	0.85[CEU][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17778396	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1859786	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs1917047	0.85[CEU][hapmap];0.95[CHB][hapmap];0.93[GIH][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1967301	0.81[EUR][1000 genomes]
rs1978201	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2040913	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2058711	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2214928	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs2216107	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2237602	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2237606	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs2237610	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2237611	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2237615	0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2237616	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2237617	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs2237618	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2237619	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2237620	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2240453	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs2240454	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs2240455	0.81[CHB][hapmap];0.89[JPT][hapmap];0.94[TSI][hapmap]
rs2240457	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs2240465	1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap]
rs2283016	0.81[EUR][1000 genomes]
rs2286124	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2299297	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2299299	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs2299312	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2299313	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2299314	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2299316	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2299320	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2299325	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2299326	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2385542	0.86[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2385556	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28461911	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28823350	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3213676	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs34003298	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34154773	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34717863	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34789097	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35442357	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35973577	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35993922	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3735372	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3779208	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3779209	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3801283	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3815256	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs4610671	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4727622	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4730067	0.85[CEU][hapmap];0.89[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs4730068	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs4730071	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs4730078	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55796396	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60446665	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62488069	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466045	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs6952534	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs717352	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs725506	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73186027	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73188303	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73188305	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs740297	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs740298	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs740300	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs757958	0.81[EUR][1000 genomes]
rs7780887	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs7783812	0.83[EUR][1000 genomes]
rs7785197	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs7805792	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7808168	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810119	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8180735	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8180737	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs875568	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs960437	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs9641343	0.86[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9641345	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs9641347	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9641348	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs999895	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv932138	chr7:104826194-105152816	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6971241	GLI3	trans	parietal	SCAN

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104754400-104850400	Weak transcription	Fetal Kidney	kidney
2	chr7:104782800-104845600	Weak transcription	Spleen	Spleen
3	chr7:104806400-104838200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:104806600-104836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:104806600-104842000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:104809000-104836600	Weak transcription	HSMM	muscle
7	chr7:104809000-104838800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr7:104809600-104838000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr7:104809800-104838000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:104810200-104840600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:104814000-104839800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr7:104815600-104836600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr7:104821000-104838400	Weak transcription	Fetal Lung	lung
14	chr7:104821600-104838400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:104822000-104836400	Weak transcription	A549	lung
16	chr7:104822000-104858800	Weak transcription	Gastric	stomach
17	chr7:104822800-104838200	Weak transcription	Primary T cells from cord blood	blood
18	chr7:104823600-104848600	Strong transcription	Dnd41	blood
19	chr7:104825000-104837800	Weak transcription	NH-A	brain
20	chr7:104827000-104839800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:104827400-104843400	Weak transcription	Psoas Muscle	Psoas
22	chr7:104827400-104850400	Weak transcription	Aorta	Aorta
23	chr7:104827800-104837600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr7:104827800-104838800	Weak transcription	K562	blood
25	chr7:104828000-104838000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr7:104828200-104840400	Weak transcription	Fetal Intestine Small	intestine
27	chr7:104828400-104836800	Enhancers	Brain Substantia Nigra	brain
28	chr7:104828600-104841000	Weak transcription	Fetal Intestine Large	intestine
29	chr7:104828600-104851000	Weak transcription	Stomach Mucosa	stomach
30	chr7:104828800-104835000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:104828800-104850000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr7:104829000-104838200	Weak transcription	Fetal Stomach	stomach
33	chr7:104829000-104839200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr7:104829400-104837200	Weak transcription	NHLF	lung
35	chr7:104829600-104836400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr7:104829600-104836400	Weak transcription	HSMMtube	muscle
37	chr7:104829800-104836600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr7:104829800-104838000	Weak transcription	NHDF-Ad	bronchial
39	chr7:104829800-104838600	Weak transcription	NHEK	skin
40	chr7:104829800-104843400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr7:104830000-104838600	Weak transcription	Fetal Muscle Leg	muscle
42	chr7:104830000-104839400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:104830000-104842800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:104830000-104843000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr7:104830000-104843600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr7:104830400-104838800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:104830600-104836800	Weak transcription	Lung	lung
48	chr7:104830600-104838400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:104830600-104838400	Weak transcription	Right Ventricle	heart
50	chr7:104830600-104840600	Weak transcription	Fetal Muscle Trunk	muscle

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