Variant report

Variant	rs1019040
Chromosome Location	chr7:104772836-104772837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:104648889..104654837-chr7:104768923..104775807,9	K562	blood:
2	chr7:104656560..104659009-chr7:104771324..104773152,2	K562	blood:
3	chr7:104771297..104772958-chr7:104788877..104790807,2	K562	blood:
4	chr7:104771792..104774094-chr7:104937728..104939504,2	K562	blood:
5	chr7:104742223..104744250-chr7:104770729..104772974,2	K562	blood:
6	chr7:104620361..104623335-chr7:104771207..104773173,3	K562	blood:
7	chr7:104651454..104654827-chr7:104768722..104773675,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000005483	Chromatin interaction
ENSG00000239569	Chromatin interaction
ENSG00000135250	Chromatin interaction
ENSG00000228393	Chromatin interaction

Extended variants
information (count: 152 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs1013016	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10224526	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10228503	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs10231782	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10231975	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10241374	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10242713	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10244764	1.00[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10245589	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10245676	1.00[CEU][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10245796	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10248422	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10248954	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10249746	0.82[AMR][1000 genomes]
rs10249965	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10252295	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10253962	0.85[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10259721	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs10260346	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10261472	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10261573	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10264273	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10268866	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10269027	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10274607	0.83[AMR][1000 genomes]
rs10276583	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs10279486	0.81[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10279602	0.83[EUR][1000 genomes]
rs10280470	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10280752	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10808139	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10808140	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10953464	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10953466	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10953467	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10953473	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs1142	0.81[ASN][1000 genomes]
rs1143	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.99[ASN][1000 genomes]
rs11520996	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11971732	0.81[AMR][1000 genomes]
rs11973516	0.93[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes]
rs11976329	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11981399	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12531424	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12532062	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12532456	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12534140	1.00[CEU][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12540007	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12667625	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12671368	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12705297	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12705299	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12705305	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs13230660	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13237370	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs17721991	1.00[CEU][hapmap];0.89[JPT][hapmap];0.87[TSI][hapmap]
rs1859786	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1917047	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[TSI][hapmap]
rs1967301	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1978201	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap]
rs2003506	0.81[ASN][1000 genomes]
rs2011258	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2058711	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2214928	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2216107	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2237602	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2237604	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2237605	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2237606	0.85[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2237607	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2237608	0.94[ASN][1000 genomes]
rs2237609	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2237610	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2237615	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs2237616	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs2237617	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs2237618	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2237619	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2237620	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs2240453	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2240454	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2240455	0.93[CEU][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2240457	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2240465	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2283016	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2285532	0.83[EUR][1000 genomes]
rs2299297	0.89[JPT][hapmap]
rs2299299	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2299313	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs2299320	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs2299326	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs2385542	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs28434158	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28489493	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2891761	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3173872	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs3213676	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3213741	0.83[EUR][1000 genomes]
rs34202980	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34558707	0.85[AMR][1000 genomes]
rs35418021	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35780942	0.83[EUR][1000 genomes]
rs3735377	0.83[AMR][1000 genomes]
rs3779208	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs3801283	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs3815256	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730065	0.83[AMR][1000 genomes]
rs4730067	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4730068	1.00[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4730069	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4730071	1.00[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6466043	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6466044	0.93[ASN][1000 genomes]
rs6466045	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6466046	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67739707	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6944847	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6952534	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6971241	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs6972229	0.83[AMR][1000 genomes]
rs717352	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs725506	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs740297	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs740298	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs740300	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs757958	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7780887	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7783812	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7785197	1.00[CEU][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7787448	0.95[ASN][1000 genomes]
rs7800233	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7805792	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7808168	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.93[YRI][hapmap]
rs7810119	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7811349	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8180737	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs875567	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs875568	0.93[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs916704	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs960437	0.93[CEU][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9641340	0.82[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9641341	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9641343	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs9641345	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs999895	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1019040	GLI3	trans	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104678000-104812200	Strong transcription	Dnd41	blood
2	chr7:104740400-104787400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:104750200-104777000	Weak transcription	Right Atrium	heart
4	chr7:104752800-104807400	Weak transcription	Fetal Brain Male	brain
5	chr7:104753800-104776600	Weak transcription	Stomach Mucosa	stomach
6	chr7:104753800-104822000	Weak transcription	Small Intestine	intestine
7	chr7:104754400-104776800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:104754400-104850400	Weak transcription	Fetal Kidney	kidney
9	chr7:104755200-104782000	Weak transcription	Colonic Mucosa	Colon
10	chr7:104755600-104776600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr7:104755600-104778200	Weak transcription	Hela-S3	cervix
12	chr7:104755600-104790400	Weak transcription	NH-A	brain
13	chr7:104756400-104779400	Weak transcription	A549	lung
14	chr7:104756400-104806600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr7:104759800-104788600	Strong transcription	Primary B cells from cord blood	blood
16	chr7:104760000-104773200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr7:104760400-104776600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:104760400-104781800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:104760800-104781600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr7:104761000-104804600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr7:104761200-104787200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr7:104762400-104787200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr7:104762800-104785000	Strong transcription	Primary T cells from cord blood	blood
24	chr7:104763200-104785000	Strong transcription	Fetal Intestine Large	intestine
25	chr7:104763400-104787000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr7:104763800-104784600	Strong transcription	Fetal Muscle Leg	muscle
27	chr7:104763800-104787400	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr7:104764400-104785000	Strong transcription	Fetal Stomach	stomach
29	chr7:104764400-104785800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:104764800-104773000	Weak transcription	NHDF-Ad	bronchial
31	chr7:104764800-104783800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr7:104766600-104785600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr7:104766800-104779800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr7:104767400-104786200	Weak transcription	Pancreas	Pancrea
35	chr7:104768600-104777400	Weak transcription	Psoas Muscle	Psoas
36	chr7:104768800-104775400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:104769000-104777000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:104769200-104773000	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr7:104769800-104776800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr7:104769800-104787000	Strong transcription	Thymus	Thymus
41	chr7:104770000-104787000	Strong transcription	Primary B cells from peripheral blood	blood
42	chr7:104770200-104775000	Strong transcription	Stomach Smooth Muscle	stomach
43	chr7:104770200-104775200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:104770200-104787800	Strong transcription	Fetal Thymus	thymus
45	chr7:104770400-104773800	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr7:104770400-104774600	Strong transcription	HMEC	breast
47	chr7:104770400-104774800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr7:104770400-104785200	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr7:104770600-104773800	Strong transcription	Placenta	Placenta
50	chr7:104770600-104774400	Strong transcription	Fetal Intestine Small	intestine

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