Variant report

Variant	rs10808140
Chromosome Location	chr7:104710135-104710136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104707718..104709440-chr7:104709810..104711789,2	MCF-7	breast:
2	chr7:104709756..104711654-chr7:104713737..104716023,2	MCF-7	breast:
3	chr7:104705262..104710596-chr7:104710916..104715928,6	K562	blood:
4	chr7:104707915..104710491-chr7:104712651..104715318,2	MCF-7	breast:
5	chr7:104706055..104708042-chr7:104708063..104710703,2	K562	blood:
6	chr7:104649023..104655837-chr7:104707951..104714558,12	K562	blood:

Variant related genes	Relation type
ENSG00000239569	Chromatin interaction
ENSG00000005483	Chromatin interaction
ENSG00000228393	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs1013016	1.00[CEU][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1019040	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10224526	0.80[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10231782	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10231975	1.00[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10241374	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10242713	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10244764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10245589	0.86[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10245676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10245796	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10248954	0.92[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10249746	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10249965	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10253962	0.85[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10260346	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10261472	0.92[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10261573	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10264273	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10268866	0.86[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10269027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10274607	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10276583	1.00[CEU][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10279486	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10279602	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10280009	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10280470	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10280752	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10808139	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10953464	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10953466	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10953467	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10953473	0.81[CHB][hapmap];0.89[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap]
rs1143	0.81[CHB][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap]
rs11520996	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11971732	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11973516	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11976329	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11981399	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12171585	0.81[EUR][1000 genomes]
rs12531424	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12532062	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12532456	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12534140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12540007	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.91[LWK][hapmap];0.84[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12667625	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12671368	0.86[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12705297	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12705299	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13230660	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13237370	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs13245298	0.91[ASN][1000 genomes]
rs1859786	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs1967301	0.81[AMR][1000 genomes]
rs1978201	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs2011258	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2058711	1.00[CEU][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2214928	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs2216107	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2237602	0.84[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2237604	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2237605	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2237606	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs2237607	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2237609	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2237610	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2237615	0.92[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap]
rs2237616	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap]
rs2237618	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2237619	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2237620	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap]
rs2240453	0.87[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2240454	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2240455	0.86[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.89[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2240457	0.80[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2240465	0.93[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.95[LWK][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2283016	0.81[EUR][1000 genomes]
rs2285532	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2299297	0.86[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2299299	0.86[ASW][hapmap];0.85[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.91[LWK][hapmap];0.84[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2299313	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap]
rs2299320	1.00[CEU][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap]
rs2299326	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap]
rs2385542	0.81[CHB][hapmap];0.89[JPT][hapmap];0.94[TSI][hapmap]
rs28434158	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28489493	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2891761	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3173872	1.00[CEU][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3213676	0.80[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.89[LWK][hapmap];0.90[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3213741	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34202980	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34558707	0.88[AMR][1000 genomes]
rs35780942	0.93[EUR][1000 genomes]
rs3735377	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3779208	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap]
rs3801283	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap]
rs3815256	0.81[CHB][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap]
rs4730065	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4730067	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4730068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730069	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4730071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6466043	0.83[AMR][1000 genomes]
rs6466045	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs6466046	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67739707	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6944847	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6952534	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6971241	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.94[TSI][hapmap]
rs6972229	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6973052	0.98[ASN][1000 genomes]
rs71562633	0.85[EUR][1000 genomes]
rs717352	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap]
rs725506	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs740297	0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs740298	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes]
rs740300	0.86[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs757958	0.89[ASN][1000 genomes]
rs7780887	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7785197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7787558	0.96[ASN][1000 genomes]
rs7800233	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7805792	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7808168	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs7810119	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7811349	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs875567	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs875568	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs916704	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs960437	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9641340	0.82[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9641341	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs999895	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases
2	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
4	esv1801863	chr7:104699637-104713419	Genic enhancers Enhancers Strong transcription Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10808140	GLI3	trans	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104677800-104758200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:104678000-104812200	Strong transcription	Dnd41	blood
3	chr7:104680600-104727000	Strong transcription	Fetal Thymus	thymus
4	chr7:104681200-104758400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:104681200-104760400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:104681400-104727000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:104685600-104720400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:104685600-104759000	Strong transcription	Primary B cells from peripheral blood	blood
9	chr7:104687800-104721200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:104694000-104711200	Strong transcription	Primary B cells from cord blood	blood
11	chr7:104697000-104726600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:104697600-104726600	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:104699800-104738400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr7:104700800-104726800	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr7:104701200-104711400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:104701200-104727000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:104701400-104758800	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr7:104701600-104726800	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr7:104701600-104727000	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr7:104701800-104710200	Strong transcription	NHDF-Ad	bronchial
21	chr7:104702200-104710600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:104702200-104727000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:104702200-104738200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:104702200-104747800	Weak transcription	Stomach Mucosa	stomach
25	chr7:104702600-104716400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr7:104702800-104722600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:104702800-104758800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:104703200-104710800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr7:104703200-104710800	Strong transcription	Adipose Nuclei	Adipose
30	chr7:104703200-104725400	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr7:104703200-104727000	Strong transcription	Liver	Liver
32	chr7:104703400-104727400	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr7:104703600-104710600	Strong transcription	K562	blood
34	chr7:104703600-104725400	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr7:104703600-104727000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:104703600-104759000	Strong transcription	Fetal Intestine Large	intestine
37	chr7:104703800-104710800	Strong transcription	Primary hematopoietic stem cells	blood
38	chr7:104703800-104711200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr7:104703800-104725600	Strong transcription	Fetal Lung	lung
40	chr7:104703800-104726200	Strong transcription	Placenta	Placenta
41	chr7:104703800-104726600	Strong transcription	Duodenum Mucosa	Duodenum
42	chr7:104703800-104735400	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr7:104704000-104710200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr7:104704000-104745200	Weak transcription	Psoas Muscle	Psoas
45	chr7:104704400-104710400	Strong transcription	Rectal Smooth Muscle	rectum
46	chr7:104704600-104710800	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr7:104704600-104710800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr7:104704600-104727000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr7:104705000-104710800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
50	chr7:104705000-104714600	Weak transcription	Brain Angular Gyrus	brain

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