Variant report

Variant	rs740298
Chromosome Location	chr7:104670433-104670434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104669078..104671448-chr7:104687448..104690363,2	MCF-7	breast:
2	chr7:104668518..104671395-chr7:104673545..104677138,3	MCF-7	breast:

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1013016	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1019040	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10224526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10231782	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10231975	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10241374	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes]
rs10242713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10244764	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10245589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10245676	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10245796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10249746	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10249965	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10253962	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10260346	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10261472	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264273	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10268866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269027	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs10274607	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10276583	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10279486	0.86[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10279602	0.95[EUR][1000 genomes]
rs10280009	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10280470	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10280752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10808139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10808140	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes]
rs10953464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10953466	0.87[EUR][1000 genomes]
rs10953467	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1143	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11971732	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11973516	0.93[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap]
rs11976329	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11981399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12171585	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12531424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12532062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12532456	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12534140	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12540007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12667625	0.90[EUR][1000 genomes]
rs12671368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12705297	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12705299	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13230660	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13237370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1859786	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs1967301	0.82[EUR][1000 genomes]
rs1978201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2011258	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2058711	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2214928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2216107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2237602	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2237604	0.91[EUR][1000 genomes]
rs2237605	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2237606	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2237610	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2240453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2240454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2240455	0.93[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2240457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2240465	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2283016	0.83[EUR][1000 genomes]
rs2285532	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2299297	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2299299	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2385542	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28434158	0.90[EUR][1000 genomes]
rs28489493	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2891761	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3173872	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3213676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3213741	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34202980	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34558707	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35418021	0.85[ASN][1000 genomes]
rs35780942	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3735377	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3779208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3815256	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4730065	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4730067	1.00[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4730068	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4730069	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4730071	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap]
rs6466043	0.82[AMR][1000 genomes]
rs6466045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6466046	0.81[EUR][1000 genomes]
rs67739707	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6952534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6971241	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6972229	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71562633	0.87[EUR][1000 genomes]
rs740297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7780887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7783812	0.81[EUR][1000 genomes]
rs7785197	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7800233	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7805792	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7808168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7810119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7811349	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs875567	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs875568	0.93[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs916704	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs960437	0.93[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9641340	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9641341	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs999895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases
2	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104656600-104681800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:104658600-104671800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr7:104658600-104673000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:104658600-104674000	Weak transcription	Fetal Thymus	thymus
5	chr7:104658600-104674200	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:104658600-104681200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:104658600-104703800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:104658800-104671600	Weak transcription	Fetal Intestine Small	intestine
9	chr7:104658800-104681800	Weak transcription	Thymus	Thymus
10	chr7:104659400-104671400	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr7:104659600-104671400	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr7:104659800-104681200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:104661600-104671200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr7:104661800-104696000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:104662000-104671600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:104662000-104672000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr7:104662600-104671600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr7:104663200-104679400	Weak transcription	Fetal Brain Female	brain
19	chr7:104663600-104670800	Weak transcription	Fetal Kidney	kidney
20	chr7:104664400-104681200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:104664600-104671000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:104665200-104679200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr7:104665400-104671000	Weak transcription	Aorta	Aorta
24	chr7:104665400-104673800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr7:104665600-104670800	Weak transcription	Fetal Intestine Large	intestine
26	chr7:104665600-104675800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:104665600-104681600	Weak transcription	NH-A	brain
28	chr7:104665600-104682200	Weak transcription	HMEC	breast
29	chr7:104665600-104682200	Weak transcription	HSMMtube	muscle
30	chr7:104665800-104670600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr7:104665800-104674400	Weak transcription	Osteobl	bone
32	chr7:104666000-104674400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:104666400-104674400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr7:104666400-104674400	Weak transcription	HSMM	muscle
35	chr7:104666400-104679600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr7:104666400-104681000	Weak transcription	NHEK	skin
37	chr7:104666400-104681200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr7:104666400-104681400	Weak transcription	Colonic Mucosa	Colon
39	chr7:104666600-104676800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:104666800-104681600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr7:104667000-104674400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:104667000-104674800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr7:104667000-104681000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr7:104667000-104681200	Weak transcription	HepG2	liver
45	chr7:104667200-104670600	Weak transcription	Adipose Nuclei	Adipose
46	chr7:104667200-104671200	Enhancers	Primary B cells from peripheral blood	blood
47	chr7:104667200-104674000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:104667400-104681000	Weak transcription	Hela-S3	cervix
49	chr7:104667600-104670800	Enhancers	Primary B cells from cord blood	blood
50	chr7:104667800-104673600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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