Variant report

Variant	rs3213676
Chromosome Location	chr7:104728607-104728608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:104651553..104653771-chr7:104726908..104729258,2	K562	blood:
2	chr7:104622725..104624630-chr7:104727486..104729559,2	K562	blood:
3	chr7:104727856..104730481-chr7:104744664..104746301,2	K562	blood:
4	chr7:104728005..104730295-chr7:104752877..104755250,2	K562	blood:
5	chr7:104721027..104723919-chr7:104728482..104730826,2	K562	blood:
6	chr7:104717490..104719449-chr7:104726208..104728832,2	K562	blood:
7	chr7:104622359..104624225-chr7:104726075..104728986,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000228393	Chromatin interaction
ENSG00000272918	Chromatin interaction
ENSG00000005483	Chromatin interaction

Extended variants
information (count: 143 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs1013016	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1019040	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10224526	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10231782	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10231975	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs10241374	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs10242713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10244764	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10245589	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245676	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10245796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10248422	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10248954	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10249746	0.85[EUR][1000 genomes]
rs10249965	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10253962	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10260346	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10261472	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10261573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10264273	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10268866	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10269027	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10274607	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10276583	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs10279486	0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10279602	0.90[EUR][1000 genomes]
rs10280009	0.83[EUR][1000 genomes]
rs10280470	0.86[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.94[TSI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10280752	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10808139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808140	0.80[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.89[LWK][hapmap];0.90[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10953464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10953466	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10953467	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10953473	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs1143	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.94[ASN][1000 genomes]
rs11520996	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11973516	0.93[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes]
rs11976329	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11981399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12171585	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12531424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12532062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12532456	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12534140	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12540007	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12667625	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12671368	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12705297	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12705299	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13230660	0.91[EUR][1000 genomes]
rs13237370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13245298	0.84[AMR][1000 genomes]
rs1859786	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.91[ASN][1000 genomes]
rs1967301	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1978201	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap]
rs2011258	0.86[EUR][1000 genomes]
rs2058711	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2214928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2216107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2237602	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2237604	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2237605	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2237606	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.91[ASN][1000 genomes]
rs2237607	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2237608	0.91[ASN][1000 genomes]
rs2237609	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2237610	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2237615	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs2237616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs2237617	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs2237618	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2237619	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2237620	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs2240453	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2240454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2240455	0.93[ASW][hapmap];0.93[CEU][hapmap];0.81[CHB][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2240457	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2240465	0.86[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.84[MEX][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2283016	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2285532	0.88[EUR][1000 genomes]
rs2299297	0.93[ASW][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes]
rs2299299	0.93[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2299313	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs2299320	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs2299326	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs2385542	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs28434158	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28489493	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2891761	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3173872	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs3213741	0.88[EUR][1000 genomes]
rs34202980	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34558707	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35418021	0.99[ASN][1000 genomes]
rs35780942	0.88[EUR][1000 genomes]
rs3735377	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3779208	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs3801283	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs3815256	1.00[CHB][hapmap];0.98[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4730065	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4730067	0.93[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4730068	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4730069	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730071	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6466043	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6466044	0.88[ASN][1000 genomes]
rs6466045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6466046	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67739707	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6944847	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6952534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6971241	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs6972229	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6973052	0.94[AFR][1000 genomes]
rs717352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs725506	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs740297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs740298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs740300	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7780887	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7783812	0.90[ASN][1000 genomes]
rs7785197	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7787448	0.90[ASN][1000 genomes]
rs7787558	0.92[AFR][1000 genomes]
rs7800233	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7805792	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7808168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7810119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7811349	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8180737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs875567	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs875568	0.93[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs916704	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs960437	0.93[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9641340	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9641341	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9641343	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs999895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases
2	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
4	esv3377784	chr7:104726466-104728889	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3213676	GLI3	trans	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104677800-104758200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:104678000-104812200	Strong transcription	Dnd41	blood
3	chr7:104681200-104758400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:104681200-104760400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr7:104685600-104759000	Strong transcription	Primary B cells from peripheral blood	blood
6	chr7:104699800-104738400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:104701400-104758800	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr7:104702200-104738200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:104702200-104747800	Weak transcription	Stomach Mucosa	stomach
10	chr7:104702800-104758800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:104703600-104759000	Strong transcription	Fetal Intestine Large	intestine
12	chr7:104703800-104735400	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:104704000-104745200	Weak transcription	Psoas Muscle	Psoas
14	chr7:104706000-104760200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:104707000-104739200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:104707800-104730000	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr7:104709600-104744400	Weak transcription	Right Ventricle	heart
18	chr7:104712400-104758800	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr7:104712600-104736600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:104713600-104735600	Strong transcription	Adipose Nuclei	Adipose
21	chr7:104715400-104731600	Weak transcription	Brain Substantia Nigra	brain
22	chr7:104718200-104750600	Weak transcription	Fetal Brain Male	brain
23	chr7:104720600-104746200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:104720800-104739200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr7:104721400-104732600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:104721400-104744600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:104721600-104728800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr7:104721600-104730600	Weak transcription	NHLF	lung
29	chr7:104721600-104732400	Weak transcription	Pancreas	Pancrea
30	chr7:104721600-104744800	Weak transcription	Spleen	Spleen
31	chr7:104721600-104749400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr7:104721800-104733400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr7:104722200-104759400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr7:104723000-104729800	Strong transcription	Thymus	Thymus
35	chr7:104723200-104737000	Weak transcription	Fetal Heart	heart
36	chr7:104723600-104729200	Weak transcription	HUVEC	blood vessel
37	chr7:104724000-104732400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr7:104724000-104743200	Weak transcription	Brain Angular Gyrus	brain
39	chr7:104724200-104744400	Weak transcription	Aorta	Aorta
40	chr7:104724200-104748000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:104724600-104729200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr7:104724600-104734800	Weak transcription	Brain Hippocampus Middle	brain
43	chr7:104724800-104729000	Weak transcription	A549	lung
44	chr7:104724800-104732800	Weak transcription	Colon Smooth Muscle	Colon
45	chr7:104724800-104743200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr7:104724800-104744000	Weak transcription	Small Intestine	intestine
47	chr7:104725000-104728800	Weak transcription	Brain Germinal Matrix	brain
48	chr7:104725000-104731400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr7:104725400-104730400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr7:104725400-104731600	Weak transcription	Fetal Brain Female	brain

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