Variant report

Variant	rs2237604
Chromosome Location	chr7:104737868-104737869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr7:104737842-104738529	IMR90	lung:	n/a	n/a
2	POLR2A	chr7:104736709-104737944	SK-N-SH	brain:	n/a	n/a
3	TEAD4	chr7:104737858-104738734	SK-N-SH	brain:	n/a	n/a
4	TCF12	chr7:104737848-104738733	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr7:104734140-104742097	K562	blood:	n/a	n/a
6	POLR2A	chr7:104737817-104738141	HepG2	liver:	n/a	n/a
7	TCF12	chr7:104737821-104738763	SK-N-SH	brain:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:104736837..104739418-chr7:104744937..104747553,3	K562	blood:
2	chr7:104653273..104655818-chr7:104737853..104740320,2	K562	blood:
3	chr7:104735400..104739100-chr7:104740586..104742968,3	K562	blood:
4	chr7:104733055..104736712-chr7:104736895..104739476,3	K562	blood:

No data

Variant related genes	Relation type
KMT2E	TF binding region
ENSG00000272918	Chromatin interaction
ENSG00000239569	Chromatin interaction
ENSG00000228393	Chromatin interaction
ENSG00000005483	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs1013016	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1019040	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10224526	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10231782	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10231975	0.84[EUR][1000 genomes]
rs10241374	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10242713	0.89[EUR][1000 genomes]
rs10244764	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10245589	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10245676	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10245796	0.87[EUR][1000 genomes]
rs10249746	0.88[EUR][1000 genomes]
rs10249965	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10253962	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10260346	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10261472	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10261573	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10264273	0.91[EUR][1000 genomes]
rs10268866	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10269027	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10274607	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10276583	0.82[EUR][1000 genomes]
rs10279486	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10279602	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10280470	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10280752	0.91[EUR][1000 genomes]
rs10808139	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10808140	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10953464	0.93[EUR][1000 genomes]
rs10953466	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10953467	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11520996	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11971732	0.82[EUR][1000 genomes]
rs11973516	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11976329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11981399	0.94[EUR][1000 genomes]
rs12531424	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12532062	0.87[EUR][1000 genomes]
rs12532456	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12534140	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12540007	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12667625	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12671368	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12705297	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12705299	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13230660	0.88[EUR][1000 genomes]
rs13245298	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1859786	0.82[EUR][1000 genomes]
rs1967301	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2011258	0.89[EUR][1000 genomes]
rs2058711	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2214928	0.84[EUR][1000 genomes]
rs2216107	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2237602	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2237605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2237606	0.82[EUR][1000 genomes]
rs2237607	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2237609	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2240453	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2240454	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2240455	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2240457	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2240465	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2283016	0.84[EUR][1000 genomes]
rs2285532	0.84[EUR][1000 genomes]
rs2299297	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2299299	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28434158	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28489493	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2891761	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3173872	0.82[EUR][1000 genomes]
rs3213676	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3213741	0.84[EUR][1000 genomes]
rs34202980	0.94[EUR][1000 genomes]
rs34558707	0.80[AMR][1000 genomes]
rs35780942	0.91[EUR][1000 genomes]
rs3735377	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3815256	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4730065	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4730067	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4730068	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4730069	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4730071	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6466043	0.86[AMR][1000 genomes]
rs6466045	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6466046	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67739707	0.87[EUR][1000 genomes]
rs6944847	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6952534	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6972229	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6973052	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs71562633	0.83[EUR][1000 genomes]
rs740297	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs740298	0.91[EUR][1000 genomes]
rs740300	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs757958	0.88[ASN][1000 genomes]
rs7780887	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7783812	0.82[EUR][1000 genomes]
rs7785197	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7787558	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7800233	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7805792	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7810119	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7811349	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs875567	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs875568	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs916704	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs960437	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9641340	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9641341	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs999895	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104677800-104758200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:104678000-104812200	Strong transcription	Dnd41	blood
3	chr7:104681200-104758400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:104681200-104760400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr7:104685600-104759000	Strong transcription	Primary B cells from peripheral blood	blood
6	chr7:104699800-104738400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:104701400-104758800	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr7:104702200-104738200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:104702200-104747800	Weak transcription	Stomach Mucosa	stomach
10	chr7:104702800-104758800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:104703600-104759000	Strong transcription	Fetal Intestine Large	intestine
12	chr7:104704000-104745200	Weak transcription	Psoas Muscle	Psoas
13	chr7:104706000-104760200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:104707000-104739200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:104709600-104744400	Weak transcription	Right Ventricle	heart
16	chr7:104712400-104758800	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr7:104718200-104750600	Weak transcription	Fetal Brain Male	brain
18	chr7:104720600-104746200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:104720800-104739200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr7:104721400-104744600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:104721600-104744800	Weak transcription	Spleen	Spleen
22	chr7:104721600-104749400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:104722200-104759400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr7:104724000-104743200	Weak transcription	Brain Angular Gyrus	brain
25	chr7:104724200-104744400	Weak transcription	Aorta	Aorta
26	chr7:104724200-104748000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:104724800-104743200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr7:104724800-104744000	Weak transcription	Small Intestine	intestine
29	chr7:104726400-104744600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr7:104726800-104743800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:104726800-104744800	Weak transcription	Gastric	stomach
32	chr7:104726800-104747800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr7:104727800-104738600	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr7:104727800-104758200	Strong transcription	Fetal Thymus	thymus
35	chr7:104727800-104759200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:104727800-104759800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr7:104727800-104760400	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr7:104728000-104738000	Strong transcription	HSMM	muscle
39	chr7:104728000-104760200	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr7:104728200-104758400	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr7:104728200-104758400	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr7:104728400-104739000	Strong transcription	GM12878-XiMat	blood
43	chr7:104728400-104756800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr7:104728400-104758400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:104728400-104758400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:104728600-104739600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr7:104728600-104756000	Strong transcription	Fetal Muscle Trunk	muscle
48	chr7:104729600-104744800	Weak transcription	NHEK	skin
49	chr7:104730600-104738800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr7:104731200-104739600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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