Variant report

Variant	rs717352
Chromosome Location	chr7:104883305-104883306
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104880747..104883616-chr7:104889920..104892326,2	MCF-7	breast:
2	chr7:104879198..104880930-chr7:104881831..104883810,3	K562	blood:
3	chr7:104869735..104872219-chr7:104880789..104883644,2	MCF-7	breast:

Extended variants
information (count: 143 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs1013016	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs1019040	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs10224564	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10228503	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10230128	1.00[CEU][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.93[EUR][1000 genomes]
rs10230449	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10233695	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235252	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10240574	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10241374	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10244764	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10245589	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs10248422	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10248954	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249170	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10252295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10253962	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs10255779	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10258841	0.96[GIH][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10259721	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10261613	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10261738	0.87[ASN][1000 genomes]
rs10261782	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10267633	0.86[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap]
rs10269027	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap]
rs10269989	0.83[JPT][hapmap]
rs10272634	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10276153	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10279486	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs10280336	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10280470	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap]
rs10280752	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs10808139	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs10808140	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap]
rs10953464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10953473	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1143	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs11769318	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11769936	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11973516	0.93[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap]
rs11973742	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11973780	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11981399	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs12531424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12534140	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs12537761	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12540007	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs12666949	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12669532	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12671368	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs12705305	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13223001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13237370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13246886	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17721991	0.91[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778396	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859786	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap]
rs1917047	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1978201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2040913	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2214928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.90[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.91[YRI][hapmap]
rs2237602	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2237606	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap]
rs2237610	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2237611	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2237615	0.91[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237616	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237617	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs2237618	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237619	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237620	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2240453	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs2240454	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs2240455	0.93[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs2240457	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs2240465	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap]
rs2286124	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299297	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2299299	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs2299312	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299313	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299314	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299316	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2299320	0.91[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299325	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299326	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2385542	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2385556	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28461911	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28823350	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3213676	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs34003298	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34154773	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34717863	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34789097	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35442357	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35973577	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35993922	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3735372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3779208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3779209	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801283	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3815256	1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.88[TSI][hapmap]
rs4610671	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4727622	0.93[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4727623	0.83[JPT][hapmap]
rs4730068	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs4730071	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs4730078	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55796396	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60446665	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62488069	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6466045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap]
rs6952534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6971241	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs725506	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73186027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73188303	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73188305	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7780887	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap]
rs7785197	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs7805792	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7808168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7810119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8180735	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8180737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs875568	0.93[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs960437	0.93[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs9641340	0.82[CEU][hapmap]
rs9641343	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9641345	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9641347	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9641348	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs999895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv932138	chr7:104826194-105152816	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs717352	GLI3	trans	parietal	SCAN

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104866400-104887200	Weak transcription	Small Intestine	intestine
2	chr7:104868400-104885400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:104869200-104892000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr7:104869400-104885000	Weak transcription	Fetal Muscle Leg	muscle
5	chr7:104869400-104885000	Weak transcription	Lung	lung
6	chr7:104869400-104885200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:104869400-104885600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:104869600-104885000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:104869600-104885000	Weak transcription	Fetal Intestine Small	intestine
10	chr7:104869600-104885000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:104869600-104885000	Weak transcription	Fetal Stomach	stomach
12	chr7:104869600-104886400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:104869600-104909200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:104870800-104889400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:104871000-104885600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:104871000-104885800	Weak transcription	HSMMtube	muscle
17	chr7:104871200-104885600	Weak transcription	HSMM	muscle
18	chr7:104872200-104897200	Weak transcription	Primary T cells from cord blood	blood
19	chr7:104872400-104886000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:104872600-104887200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr7:104872600-104889200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr7:104872800-104886200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr7:104874000-104885600	Weak transcription	K562	blood
24	chr7:104875000-104893800	Genic enhancers	Dnd41	blood
25	chr7:104875600-104885000	Weak transcription	Fetal Thymus	thymus
26	chr7:104877200-104898400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr7:104877600-104887400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr7:104878800-104885000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr7:104878800-104886200	Weak transcription	NHEK	skin
30	chr7:104879000-104883800	Weak transcription	Gastric	stomach
31	chr7:104879000-104885000	Weak transcription	Ovary	ovary
32	chr7:104879000-104885000	Weak transcription	Right Atrium	heart
33	chr7:104879000-104885600	Weak transcription	Pancreas	Pancrea
34	chr7:104879000-104885800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr7:104879000-104886000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr7:104879000-104886600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr7:104879000-104886600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr7:104879000-104886600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr7:104879000-104889000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:104879000-104890800	Weak transcription	Aorta	Aorta
41	chr7:104879000-104891800	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr7:104879000-104907800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr7:104879400-104885200	Weak transcription	Right Ventricle	heart
44	chr7:104879600-104897400	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr7:104879800-104896800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:104880600-104886000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr7:104880600-104886400	Weak transcription	Osteobl	bone
48	chr7:104880800-104885600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr7:104880800-104885600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr7:104880800-104885600	Weak transcription	Left Ventricle	heart

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