Variant report

Variant	rs10485388
Chromosome Location	chr6:74811695-74811696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11751061	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751175	0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs11751771	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11754164	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11754468	0.81[ASN][1000 genomes]
rs11756254	0.99[EUR][1000 genomes]
rs11757198	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11759133	0.81[ASN][1000 genomes]
rs12190509	0.99[EUR][1000 genomes]
rs12191462	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191866	0.99[EUR][1000 genomes]
rs12193999	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12198091	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12202104	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12202674	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12205582	0.99[EUR][1000 genomes]
rs12205749	0.99[EUR][1000 genomes]
rs12206043	0.93[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes]
rs12209564	0.97[EUR][1000 genomes]
rs12209571	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12213297	0.97[EUR][1000 genomes]
rs12213804	0.82[EUR][1000 genomes]
rs12215639	0.99[EUR][1000 genomes]
rs3923228	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4279396	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4537105	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4546447	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644011	0.93[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes]
rs55755114	0.87[ASN][1000 genomes]
rs55768795	0.81[ASN][1000 genomes]
rs55784940	0.81[ASN][1000 genomes]
rs55789428	0.99[EUR][1000 genomes]
rs56004196	0.85[ASN][1000 genomes]
rs56104278	0.99[EUR][1000 genomes]
rs56138029	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56362119	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56396434	0.99[EUR][1000 genomes]
rs66472340	0.99[EUR][1000 genomes]
rs66865230	0.99[EUR][1000 genomes]
rs72950543	0.85[ASN][1000 genomes]
rs72950546	0.85[ASN][1000 genomes]
rs72952344	0.91[ASN][1000 genomes]
rs72952371	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72952395	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72952398	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72954314	0.81[ASN][1000 genomes]
rs72955171	0.99[EUR][1000 genomes]
rs72955173	0.99[EUR][1000 genomes]
rs72955185	0.99[EUR][1000 genomes]
rs72955196	0.99[EUR][1000 genomes]
rs72955199	0.99[EUR][1000 genomes]
rs72955201	0.97[EUR][1000 genomes]
rs72962230	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72964214	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030389	chr6:74606701-74811706	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1017333	chr6:74776830-74907758	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538307	chr6:74776830-74907758	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1834914	chr6:74811585-74833405	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv1839627	chr6:74811585-74833405	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74811000-74813200	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links