Variant report

Variant	rs10751324
Chromosome Location	chr10:44115036-44115037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44114091..44116309-chr10:44123569..44126300,2	K562	blood:
2	chr10:44111828..44115534-chr10:44118358..44120756,4	K562	blood:
3	chr10:44052358..44053877-chr10:44114042..44116441,2	K562	blood:
4	chr10:44047252..44049583-chr10:44114219..44116060,2	K562	blood:

Variant related genes	Relation type
ENSG00000223910	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10736822	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10751327	0.80[CEU][hapmap]
rs10751328	0.80[CEU][hapmap]
rs10793452	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793453	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10793454	0.92[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes]
rs10793455	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10793456	0.84[ASN][1000 genomes]
rs10793457	0.85[ASN][1000 genomes]
rs10793458	0.81[AMR][1000 genomes]
rs10793459	0.83[CEU][hapmap]
rs10793464	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10793466	0.87[CEU][hapmap]
rs10899840	0.83[ASN][1000 genomes]
rs10899841	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10899842	0.84[ASN][1000 genomes]
rs10899844	0.80[CEU][hapmap]
rs10899845	0.80[CEU][hapmap]
rs10899846	0.85[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes]
rs10899848	0.84[CEU][hapmap]
rs11238601	0.92[CEU][hapmap];0.87[CHB][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11238609	0.80[CEU][hapmap]
rs3123678	0.82[JPT][hapmap]
rs3814561	0.92[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs4078412	0.92[CEU][hapmap];0.87[CHB][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap];0.81[AMR][1000 genomes]
rs4415708	0.92[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs4537714	0.92[CEU][hapmap];0.87[CHB][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap];0.83[AMR][1000 genomes]
rs61859187	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8181305	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10751324	ZNF485	cis	lymphoblastoid	seeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44102800-44118800	Weak transcription	Fetal Heart	heart
2	chr10:44112600-44118200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:44112600-44118400	Weak transcription	Brain Angular Gyrus	brain
4	chr10:44112600-44118800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:44112800-44118400	Weak transcription	Brain Anterior Caudate	brain
6	chr10:44112800-44118400	Weak transcription	Brain Substantia Nigra	brain
7	chr10:44112800-44118400	Weak transcription	Ovary	ovary
8	chr10:44113000-44118400	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:44113000-44119000	Weak transcription	Pancreas	Pancrea
10	chr10:44113200-44118600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:44113200-44118800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:44113200-44118800	Weak transcription	Fetal Kidney	kidney
13	chr10:44113200-44118800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:44113800-44115200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:44114600-44116600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:44114800-44115200	ZNF genes & repeats	HSMM	muscle
17	chr10:44114800-44116000	Strong transcription	Dnd41	blood
18	chr10:44114800-44118800	Weak transcription	NHDF-Ad	bronchial
19	chr10:44115000-44116600	ZNF genes & repeats	Liver	Liver

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