Variant report

Variant	rs10899848
Chromosome Location	chr10:44134673-44134674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44100139..44103365-chr10:44132846..44135185,3	K562	blood:
2	chr10:44132141..44136409-chr10:44137048..44141593,8	K562	blood:
3	chr10:44132457..44135103-chr10:44137604..44139147,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF485-6	chr10:44134003-44137534	NONHSAT012980

Variant related genes	Relation type
ENSG00000230565	Chromatin interaction
ENSG00000198298	Chromatin interaction
ENSG00000232004	Chromatin interaction
ENSG00000226245	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10430722	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10736820	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10736821	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10736822	0.88[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10751324	0.84[CEU][hapmap]
rs10751325	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10751326	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10751327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751329	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10751330	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10751331	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793452	0.81[CEU][hapmap]
rs10793454	0.88[CEU][hapmap]
rs10793458	0.83[EUR][1000 genomes]
rs10793459	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10793460	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10793461	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793463	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10793464	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10793466	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs10793467	0.84[EUR][1000 genomes]
rs10899841	0.88[CEU][hapmap]
rs10899843	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899844	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899845	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899846	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs10899849	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899850	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899851	0.84[EUR][1000 genomes]
rs10899853	0.84[EUR][1000 genomes]
rs10899854	0.82[EUR][1000 genomes]
rs11238601	0.88[CEU][hapmap]
rs11238602	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11238609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238617	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12248526	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12254814	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2505644	0.80[ASN][1000 genomes]
rs3123657	0.80[ASN][1000 genomes]
rs3123671	0.81[ASN][1000 genomes]
rs3123674	0.93[YRI][hapmap]
rs3128245	0.84[ASN][1000 genomes]
rs3128247	0.85[ASN][1000 genomes]
rs3128249	0.84[ASN][1000 genomes]
rs3814561	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3814563	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4078412	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs4326744	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4347333	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4415708	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs4431980	0.82[EUR][1000 genomes]
rs4537714	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs61859201	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8181305	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs872532	0.82[EUR][1000 genomes]
rs9422395	0.80[ASN][1000 genomes]
rs962557	0.82[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44133800-44135600	Weak transcription	Fetal Brain Female	brain
2	chr10:44133800-44136800	Weak transcription	HSMM	muscle

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