Variant report

Variant	rs3128247
Chromosome Location	chr10:44145822-44145823
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44144821..44147176-chr10:44149146..44150955,2	MCF-7	breast:
2	chr10:44140472..44142370-chr10:44143162..44146127,2	MCF-7	breast:
3	chr10:44101716..44103228-chr10:44144444..44146869,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198298	Chromatin interaction
ENSG00000169740	Chromatin interaction
ENSG00000230565	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10736821	0.86[ASN][1000 genomes]
rs10736822	0.81[LWK][hapmap]
rs10751325	0.81[ASN][1000 genomes]
rs10751327	0.81[LWK][hapmap];0.87[ASN][1000 genomes]
rs10751328	0.81[LWK][hapmap];0.87[ASN][1000 genomes]
rs10751330	0.88[ASN][1000 genomes]
rs10751331	0.87[ASN][1000 genomes]
rs10793459	0.82[ASN][1000 genomes]
rs10793461	0.87[ASN][1000 genomes]
rs10793463	0.86[ASN][1000 genomes]
rs10899844	0.82[CHB][hapmap]
rs10899845	0.82[CHB][hapmap]
rs10899848	0.85[ASN][1000 genomes]
rs10899849	0.86[ASN][1000 genomes]
rs10899850	0.86[ASN][1000 genomes]
rs11238609	0.87[ASN][1000 genomes]
rs12248526	0.87[ASN][1000 genomes]
rs12254814	0.86[ASN][1000 genomes]
rs2484664	0.94[ASN][1000 genomes]
rs2484665	0.93[ASN][1000 genomes]
rs2484667	0.93[ASN][1000 genomes]
rs2505644	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3123657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3123661	0.94[ASN][1000 genomes]
rs3123668	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs3123669	0.92[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs3123671	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3123673	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3123674	0.88[CEU][hapmap];0.88[LWK][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3123676	0.87[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs3123677	0.81[ASN][1000 genomes]
rs3123678	0.87[TSI][hapmap]
rs3128245	0.99[ASN][1000 genomes]
rs3128249	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9422395	0.93[ASN][1000 genomes]
rs9422564	0.91[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44145000-44149000	Weak transcription	NHDF-Ad	bronchial
2	chr10:44145000-44149000	Weak transcription	Osteobl	bone
3	chr10:44145000-44149200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:44145000-44149200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:44145000-44153600	Weak transcription	Fetal Stomach	stomach
6	chr10:44145200-44148600	Weak transcription	Fetal Heart	heart
7	chr10:44145200-44148800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:44145200-44149000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:44145200-44149000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:44145400-44147600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:44145400-44148800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:44145600-44149200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:44145600-44149200	Weak transcription	Fetal Kidney	kidney

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