Variant report

Variant	rs10899850
Chromosome Location	chr10:44145012-44145013
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:44144940-44145090	GM12873	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44125188..44126781-chr10:44143124..44145486,2	K562	blood:
2	chr10:44144821..44147176-chr10:44149146..44150955,2	MCF-7	breast:
3	chr10:44140472..44142370-chr10:44143162..44146127,2	MCF-7	breast:
4	chr10:44100612..44103408-chr10:44143126..44145241,3	MCF-7	breast:
5	chr10:44101716..44103228-chr10:44144444..44146869,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF32	TF binding region
ENSG00000230565	Chromatin interaction
ENSG00000169740	Chromatin interaction
ENSG00000198298	Chromatin interaction
ENSG00000232004	Chromatin interaction
ENSG00000238263	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10430722	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10736820	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10736821	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10736822	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10751325	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10751326	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10751327	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751328	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751329	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10751330	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751331	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793458	0.81[EUR][1000 genomes]
rs10793459	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793460	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10793461	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793463	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793464	0.87[EUR][1000 genomes]
rs10793466	0.90[EUR][1000 genomes]
rs10793467	0.90[EUR][1000 genomes]
rs10899843	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899844	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899845	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899846	0.84[EUR][1000 genomes]
rs10899848	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899849	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899851	0.90[EUR][1000 genomes]
rs10899853	0.90[EUR][1000 genomes]
rs10899854	0.87[EUR][1000 genomes]
rs11238601	0.83[EUR][1000 genomes]
rs11238602	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11238609	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238617	0.90[EUR][1000 genomes]
rs12248526	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12254814	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2484664	0.81[ASN][1000 genomes]
rs2484665	0.80[ASN][1000 genomes]
rs2484667	0.80[ASN][1000 genomes]
rs2505644	0.82[ASN][1000 genomes]
rs3123657	0.82[ASN][1000 genomes]
rs3123661	0.81[ASN][1000 genomes]
rs3123671	0.82[ASN][1000 genomes]
rs3128245	0.86[ASN][1000 genomes]
rs3128247	0.86[ASN][1000 genomes]
rs3128249	0.86[ASN][1000 genomes]
rs3814561	0.90[EUR][1000 genomes]
rs3814563	0.88[EUR][1000 genomes]
rs4078412	0.81[EUR][1000 genomes]
rs4326744	0.91[EUR][1000 genomes]
rs4347333	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4415708	0.84[EUR][1000 genomes]
rs4431980	0.87[EUR][1000 genomes]
rs4537714	0.81[EUR][1000 genomes]
rs61859201	0.88[EUR][1000 genomes]
rs8181305	0.80[EUR][1000 genomes]
rs872532	0.87[EUR][1000 genomes]
rs9422395	0.81[ASN][1000 genomes]
rs962557	0.87[EUR][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44143400-44145200	Active TSS	Colon Smooth Muscle	Colon
2	chr10:44143400-44145200	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr10:44143600-44145200	Active TSS	Brain Substantia Nigra	brain
4	chr10:44143600-44145200	Active TSS	Stomach Mucosa	stomach
5	chr10:44143600-44145600	Active TSS	Brain Anterior Caudate	brain
6	chr10:44143800-44145200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:44144400-44145200	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr10:44144400-44145400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr10:44144400-44145400	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr10:44144400-44145400	Flanking Active TSS	Dnd41	blood
11	chr10:44144600-44145200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr10:44144600-44145400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr10:44144800-44145200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr10:44144800-44145200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:44144800-44145200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:44144800-44145200	Active TSS	Liver	Liver
17	chr10:44144800-44145200	Flanking Active TSS	Brain Angular Gyrus	brain
18	chr10:44144800-44145200	Flanking Active TSS	Brain Cingulate Gyrus	brain
19	chr10:44144800-44145200	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr10:44144800-44145200	Flanking Active TSS	Fetal Brain Female	brain
21	chr10:44144800-44145200	Enhancers	Fetal Heart	heart
22	chr10:44144800-44145200	Enhancers	Fetal Thymus	thymus
23	chr10:44144800-44145200	Enhancers	Left Ventricle	heart
24	chr10:44144800-44145200	Enhancers	Pancreas	Pancrea
25	chr10:44144800-44145200	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr10:44144800-44145400	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr10:44144800-44145400	Flanking Active TSS	Brain Germinal Matrix	brain
28	chr10:44144800-44145400	Weak transcription	Lung	lung
29	chr10:44144800-44145400	Weak transcription	Ovary	ovary
30	chr10:44144800-44145400	Flanking Active TSS	Rectal Smooth Muscle	rectum
31	chr10:44144800-44145600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:44144800-44145600	Weak transcription	Spleen	Spleen
33	chr10:44145000-44145200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:44145000-44145200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr10:44145000-44145200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:44145000-44145200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:44145000-44145200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:44145000-44145200	Active TSS	Muscle Satellite Cultured Cells	--
39	chr10:44145000-44145200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:44145000-44145200	Active TSS	Duodenum Mucosa	Duodenum
41	chr10:44145000-44145200	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr10:44145000-44145200	Bivalent Enhancer	Fetal Muscle Leg	muscle
43	chr10:44145000-44145200	Enhancers	Psoas Muscle	Psoas
44	chr10:44145000-44145200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
45	chr10:44145000-44145400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:44145000-44145400	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr10:44145000-44145400	Weak transcription	Fetal Kidney	kidney
48	chr10:44145000-44145600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr10:44145000-44145600	Enhancers	Fetal Brain Male	brain
50	chr10:44145000-44145800	Bivalent Enhancer	HepG2	liver

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