Variant report

Variant	rs10899854
Chromosome Location	chr10:44175771-44175772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44173211..44175882-chr10:44184314..44186858,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10430723	0.80[ASN][1000 genomes]
rs10736820	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10736821	0.85[EUR][1000 genomes]
rs10736822	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10751326	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10751327	0.86[EUR][1000 genomes]
rs10751328	0.84[EUR][1000 genomes]
rs10751329	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10751330	0.82[EUR][1000 genomes]
rs10751331	0.84[EUR][1000 genomes]
rs10793453	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10793454	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10793455	0.82[AMR][1000 genomes]
rs10793456	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10793457	0.84[AMR][1000 genomes]
rs10793458	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10793460	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793461	0.86[EUR][1000 genomes]
rs10793463	0.84[EUR][1000 genomes]
rs10793464	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793466	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793467	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899840	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10899841	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10899842	0.84[AMR][1000 genomes]
rs10899846	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899848	0.82[EUR][1000 genomes]
rs10899849	0.87[EUR][1000 genomes]
rs10899850	0.87[EUR][1000 genomes]
rs10899851	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899852	0.96[ASN][1000 genomes]
rs10899853	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899855	0.85[ASN][1000 genomes]
rs11238601	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11238609	0.85[EUR][1000 genomes]
rs11238617	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12248526	0.87[EUR][1000 genomes]
rs12254814	0.82[EUR][1000 genomes]
rs3123673	0.80[ASN][1000 genomes]
rs3814561	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3814563	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4078412	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4326744	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4347333	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4415708	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4431980	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4537714	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61859187	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61859201	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8181305	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs872532	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs962557	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44163400-44176800	Weak transcription	Right Atrium	heart
2	chr10:44170600-44176800	Weak transcription	Spleen	Spleen
3	chr10:44173800-44177400	Enhancers	Fetal Brain Male	brain
4	chr10:44174000-44176000	Enhancers	Fetal Brain Female	brain
5	chr10:44174000-44176200	Enhancers	Brain Germinal Matrix	brain
6	chr10:44174000-44177400	Enhancers	Fetal Lung	lung
7	chr10:44174200-44175800	Enhancers	Pancreas	Pancrea
8	chr10:44174200-44177000	Enhancers	Colon Smooth Muscle	Colon
9	chr10:44174200-44177000	Enhancers	Fetal Stomach	stomach
10	chr10:44174200-44177400	Enhancers	Fetal Muscle Leg	muscle
11	chr10:44174400-44176200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:44174400-44184600	Weak transcription	Lung	lung
13	chr10:44174400-44185000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:44174600-44176200	Enhancers	Rectal Smooth Muscle	rectum
15	chr10:44175000-44175800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:44175000-44175800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:44175000-44176800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:44175000-44177000	Enhancers	Adipose Nuclei	Adipose
19	chr10:44175200-44175800	Enhancers	Psoas Muscle	Psoas
20	chr10:44175200-44175800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:44175200-44176000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:44175200-44176000	Enhancers	K562	blood
23	chr10:44175200-44176400	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr10:44175200-44176800	Enhancers	NHDF-Ad	bronchial
25	chr10:44175200-44177000	Enhancers	Left Ventricle	heart
26	chr10:44175400-44176800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:44175600-44175800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:44175600-44175800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:44175600-44176200	Enhancers	Osteobl	bone
30	chr10:44175600-44176400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr10:44175600-44176800	Enhancers	Stomach Smooth Muscle	stomach
32	chr10:44175600-44181200	Weak transcription	Right Ventricle	heart

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