Variant report

Variant	rs11238617
Chromosome Location	chr10:44137414-44137415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:44137383-44138330	K562	blood:	n/a	n/a
2	POLR2A	chr10:44137312-44137630	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr10:44136935-44137477	GM12878	blood:	n/a	n/a
4	SETDB1	chr10:44137177-44138691	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44136981..44138656-chr10:44141418..44144179,3	MCF-7	breast:
2	chr10:44068167..44069924-chr10:44136851..44139304,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF485-6	chr10:44134003-44137534	NONHSAT012980

Variant related genes	Relation type
ZNF32-AS2	TF binding region
ZNF32-AS1	TF binding region
ENSG00000169740	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10430723	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10736820	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736821	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10736822	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751325	0.80[EUR][1000 genomes]
rs10751326	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751327	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10751328	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10751329	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751330	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10751331	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10793452	0.83[AMR][1000 genomes]
rs10793453	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10793454	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10793455	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10793456	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10793457	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10793458	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793459	0.81[EUR][1000 genomes]
rs10793460	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793461	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10793463	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10793464	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793466	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793467	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899840	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899841	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899842	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899843	0.81[EUR][1000 genomes]
rs10899845	0.82[EUR][1000 genomes]
rs10899846	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899848	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10899849	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10899850	0.90[EUR][1000 genomes]
rs10899851	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899852	0.93[ASN][1000 genomes]
rs10899853	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899854	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11238601	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238602	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11238609	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12248526	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12254814	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3123673	0.89[ASN][1000 genomes]
rs3123674	0.86[ASN][1000 genomes]
rs3814561	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3814563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4078412	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4326744	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4347333	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4415708	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4431980	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4537714	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61859187	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61859201	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8181305	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs872532	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs962557	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44135600-44142800	ZNF genes & repeats	Fetal Brain Female	brain
2	chr10:44136800-44141600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
3	chr10:44136800-44142000	ZNF genes & repeats	Brain Germinal Matrix	brain
4	chr10:44136800-44142000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
5	chr10:44136800-44142200	ZNF genes & repeats	Brain Hippocampus Middle	brain
6	chr10:44136800-44142200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
7	chr10:44136800-44142400	ZNF genes & repeats	Liver	Liver
8	chr10:44136800-44142400	ZNF genes & repeats	HSMM	muscle
9	chr10:44136800-44143400	ZNF genes & repeats	Fetal Lung	lung
10	chr10:44137000-44139400	Weak transcription	Stomach Mucosa	stomach
11	chr10:44137000-44142000	ZNF genes & repeats	Brain Substantia Nigra	brain
12	chr10:44137000-44143000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
13	chr10:44137000-44143400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr10:44137000-44143600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:44137200-44137600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:44137200-44138800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:44137200-44141600	ZNF genes & repeats	Brain Angular Gyrus	brain
18	chr10:44137200-44142000	ZNF genes & repeats	Primary B cells from cord blood	blood
19	chr10:44137200-44142200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr10:44137200-44142800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:44137200-44143200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:44137200-44143200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:44137200-44143400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
24	chr10:44137400-44137600	Weak transcription	Fetal Heart	heart
25	chr10:44137400-44137800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:44137400-44142200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
27	chr10:44137400-44142200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:44137400-44142200	ZNF genes & repeats	Brain Anterior Caudate	brain
29	chr10:44137400-44142400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
30	chr10:44137400-44142600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
31	chr10:44137400-44143200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr10:44137400-44143200	ZNF genes & repeats	Fetal Kidney	kidney
33	chr10:44137400-44143400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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