Variant report

Variant	rs10899845
Chromosome Location	chr10:44118189-44118190
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44115455..44118404-chr10:44124628..44127312,2	MCF-7	breast:
2	chr10:44115730..44119631-chr10:44140992..44144540,5	K562	blood:

Variant related genes	Relation type
ENSG00000238263	Chromatin interaction
ENSG00000169740	Chromatin interaction
ENSG00000237389	Chromatin interaction
ENSG00000230565	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10430722	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10736820	0.82[EUR][1000 genomes]
rs10736821	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10736822	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs10751324	0.80[CEU][hapmap]
rs10751325	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10751326	0.80[EUR][1000 genomes]
rs10751327	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10751328	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10751330	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10751331	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10793452	0.82[CEU][hapmap]
rs10793453	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10793454	0.88[CEU][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10793455	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10793456	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10793457	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10793458	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10793459	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10793460	0.82[EUR][1000 genomes]
rs10793461	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10793463	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10793464	0.88[CEU][hapmap];0.88[YRI][hapmap]
rs10793466	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs10793467	0.80[EUR][1000 genomes]
rs10899840	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10899841	0.89[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10899842	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10899843	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899846	0.81[CEU][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10899848	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899849	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899850	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899851	0.80[EUR][1000 genomes]
rs10899853	0.80[EUR][1000 genomes]
rs11238601	0.88[CEU][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11238602	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11238609	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11238617	0.82[EUR][1000 genomes]
rs12248526	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12254814	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3123657	0.81[JPT][hapmap]
rs3123671	0.82[CHB][hapmap]
rs3123676	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs3123677	0.83[ASN][1000 genomes]
rs3128247	0.82[CHB][hapmap]
rs3128249	0.81[JPT][hapmap]
rs3814561	0.88[CEU][hapmap];0.88[YRI][hapmap];0.82[EUR][1000 genomes]
rs3814563	0.81[EUR][1000 genomes]
rs4078412	0.88[CEU][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4326744	0.81[EUR][1000 genomes]
rs4347333	0.81[EUR][1000 genomes]
rs4415708	0.89[CEU][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4537714	0.88[CEU][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61859187	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61859201	0.83[EUR][1000 genomes]
rs8181305	0.89[CEU][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44102800-44118800	Weak transcription	Fetal Heart	heart
2	chr10:44112600-44118200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:44112600-44118400	Weak transcription	Brain Angular Gyrus	brain
4	chr10:44112600-44118800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:44112800-44118400	Weak transcription	Brain Anterior Caudate	brain
6	chr10:44112800-44118400	Weak transcription	Brain Substantia Nigra	brain
7	chr10:44112800-44118400	Weak transcription	Ovary	ovary
8	chr10:44113000-44118400	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:44113000-44119000	Weak transcription	Pancreas	Pancrea
10	chr10:44113200-44118600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:44113200-44118800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:44113200-44118800	Weak transcription	Fetal Kidney	kidney
13	chr10:44113200-44118800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:44114800-44118800	Weak transcription	NHDF-Ad	bronchial
15	chr10:44116800-44118600	Flanking Active TSS	Dnd41	blood
16	chr10:44117200-44118600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:44117400-44118600	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr10:44117600-44118600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:44117800-44118400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr10:44117800-44118400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:44117800-44119000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:44118000-44118600	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr10:44118000-44118600	Weak transcription	K562	blood
24	chr10:44118000-44119400	Active TSS	Liver	Liver

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