Variant report

Variant	rs10751327
Chromosome Location	chr10:44137293-44137294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:44136935-44137477	GM12878	blood:	n/a	n/a
2	SETDB1	chr10:44137177-44138691	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44136981..44138656-chr10:44141418..44144179,3	MCF-7	breast:
2	chr10:44068167..44069924-chr10:44136851..44139304,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF485-6	chr10:44134003-44137534	NONHSAT012980

Variant related genes	Relation type
ZNF32-AS1	TF binding region
ZNF32-AS2	TF binding region
ENSG00000169740	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10430722	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10736820	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10736821	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10736822	0.82[ASW][hapmap];0.88[CEU][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10751324	0.80[CEU][hapmap]
rs10751325	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10751326	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10751328	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751329	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10751330	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10751331	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793452	0.84[CEU][hapmap]
rs10793454	0.88[CEU][hapmap];0.82[MEX][hapmap];0.81[MKK][hapmap];0.89[TSI][hapmap]
rs10793458	0.82[EUR][1000 genomes]
rs10793459	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793460	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10793461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793464	0.88[CEU][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10793466	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs10793467	0.89[EUR][1000 genomes]
rs10899841	0.88[CEU][hapmap]
rs10899843	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899844	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899845	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899846	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs10899848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899849	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899850	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899851	0.89[EUR][1000 genomes]
rs10899853	0.89[EUR][1000 genomes]
rs10899854	0.86[EUR][1000 genomes]
rs11238601	0.88[CEU][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs11238602	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238609	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238617	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12248526	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254814	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2484664	0.81[ASN][1000 genomes]
rs2484665	0.81[ASN][1000 genomes]
rs2484667	0.81[ASN][1000 genomes]
rs2505644	0.82[ASN][1000 genomes]
rs3123657	0.82[ASN][1000 genomes]
rs3123661	0.81[ASN][1000 genomes]
rs3123671	0.83[ASN][1000 genomes]
rs3123674	0.84[LWK][hapmap];0.93[YRI][hapmap]
rs3128245	0.86[ASN][1000 genomes]
rs3128247	0.81[LWK][hapmap];0.87[ASN][1000 genomes]
rs3128249	0.86[ASN][1000 genomes]
rs3814561	0.88[CEU][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3814563	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4078412	0.88[CEU][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs4326744	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4347333	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4415708	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs4431980	0.86[EUR][1000 genomes]
rs4537714	0.88[CEU][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs61859201	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8181305	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs872532	0.86[EUR][1000 genomes]
rs9422395	0.82[ASN][1000 genomes]
rs9422564	0.81[ASN][1000 genomes]
rs962557	0.86[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44135600-44142800	ZNF genes & repeats	Fetal Brain Female	brain
2	chr10:44136800-44141600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
3	chr10:44136800-44142000	ZNF genes & repeats	Brain Germinal Matrix	brain
4	chr10:44136800-44142000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
5	chr10:44136800-44142200	ZNF genes & repeats	Brain Hippocampus Middle	brain
6	chr10:44136800-44142200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
7	chr10:44136800-44142400	ZNF genes & repeats	Liver	Liver
8	chr10:44136800-44142400	ZNF genes & repeats	HSMM	muscle
9	chr10:44136800-44143400	ZNF genes & repeats	Fetal Lung	lung
10	chr10:44137000-44139400	Weak transcription	Stomach Mucosa	stomach
11	chr10:44137000-44142000	ZNF genes & repeats	Brain Substantia Nigra	brain
12	chr10:44137000-44143000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
13	chr10:44137000-44143400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr10:44137000-44143600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:44137200-44137400	ZNF genes & repeats	Fetal Heart	heart
16	chr10:44137200-44137600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:44137200-44138800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr10:44137200-44141600	ZNF genes & repeats	Brain Angular Gyrus	brain
19	chr10:44137200-44142000	ZNF genes & repeats	Primary B cells from cord blood	blood
20	chr10:44137200-44142200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr10:44137200-44142800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:44137200-44143200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:44137200-44143200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:44137200-44143400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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