Variant report

Variant	rs2484665
Chromosome Location	chr10:44173644-44173645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44173211..44175756-chr10:44184314..44186963,2	K562	blood:
2	chr10:44173211..44175882-chr10:44184314..44186858,2	K562	blood:
3	chr10:44173522..44175308-chr10:44181432..44183348,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10736821	0.80[ASN][1000 genomes]
rs10751327	0.81[ASN][1000 genomes]
rs10751328	0.81[ASN][1000 genomes]
rs10751330	0.81[ASN][1000 genomes]
rs10751331	0.81[ASN][1000 genomes]
rs10793461	0.81[ASN][1000 genomes]
rs10899850	0.80[ASN][1000 genomes]
rs11238609	0.81[ASN][1000 genomes]
rs12248526	0.81[ASN][1000 genomes]
rs2484664	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2484667	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2505644	0.98[ASN][1000 genomes]
rs3123657	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3123661	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3123668	0.86[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap]
rs3123669	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap]
rs3123671	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[ASN][1000 genomes]
rs3123676	0.93[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs3128245	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3128247	0.84[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3128249	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9422395	0.89[CHB][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422564	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44163400-44176800	Weak transcription	Right Atrium	heart
2	chr10:44167600-44174200	Weak transcription	Pancreas	Pancrea
3	chr10:44167600-44175200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:44169800-44175200	Weak transcription	Gastric	stomach
5	chr10:44170400-44174200	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:44170600-44173800	Weak transcription	Fetal Brain Male	brain
7	chr10:44170600-44174000	Weak transcription	Fetal Brain Female	brain
8	chr10:44170600-44174000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:44170600-44174200	Weak transcription	Lung	lung
10	chr10:44170600-44174600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:44170600-44175200	Weak transcription	Left Ventricle	heart
12	chr10:44170600-44176800	Weak transcription	Spleen	Spleen
13	chr10:44172400-44174600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:44172600-44174200	Weak transcription	Esophagus	oesophagus
15	chr10:44172600-44174400	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links