Variant report

Variant	rs10751331
Chromosome Location	chr10:44143473-44143474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr10:44143472-44144790	K562	blood:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
2	SREBP1	chr10:44143073-44144967	GM12878	blood:	n/a	n/a
3	POLR2A	chr10:44143436-44143707	HepG2	liver:	n/a	n/a
4	ZNF143	chr10:44143456-44144922	K562	blood:	n/a	chr10:44144406-44144415 chr10:44144307-44144317 chr10:44144399-44144417 chr10:44144327-44144336 chr10:44144306-44144316 chr10:44144408-44144417 chr10:44144301-44144311 chr10:44143924-44143942 chr10:44144325-44144343 chr10:44143930-44143948 chr10:44144325-44144334
5	REST	chr10:44143428-44144937	H1-neurons	neurons:	n/a	chr10:44144175-44144188
6	POLR2A	chr10:44143307-44143507	MCF10A-Er-Src	breast:	n/a	n/a
7	SETDB1	chr10:44142946-44144804	U2OS	brain:	n/a	chr10:44144323-44144347 chr10:44144298-44144307 chr10:44144304-44144313 chr10:44144395-44144419
8	POLR2A	chr10:44143330-44144616	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:44101689..44104570-chr10:44142385..44144867,2	K562	blood:
2	chr10:44125188..44126781-chr10:44143124..44145486,2	K562	blood:
3	chr10:44140472..44142370-chr10:44143162..44146127,2	MCF-7	breast:
4	chr10:44100612..44103408-chr10:44143126..44145241,3	MCF-7	breast:
5	chr10:44138867..44141721-chr10:44141933..44143603,2	MCF-7	breast:
6	chr10:43915151..43917098-chr10:44141914..44144023,2	MCF-7	breast:
7	chr10:44121619..44124737-chr10:44140995..44143935,3	K562	blood:
8	chr10:44123689..44125547-chr10:44142014..44144149,2	MCF-7	breast:

Variant related genes	Relation type
ZNF32	TF binding region
ENSG00000223910	Chromatin interaction
ENSG00000198298	Chromatin interaction
ENSG00000230555	Chromatin interaction
ENSG00000230565	Chromatin interaction
ENSG00000169740	Chromatin interaction
ENSG00000232004	Chromatin interaction
ENSG00000226245	Chromatin interaction
ENSG00000238263	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10430722	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10736820	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10736821	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10736822	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10751325	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10751326	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10751327	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751328	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751329	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10751330	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793458	0.83[EUR][1000 genomes]
rs10793459	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793460	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10793461	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793463	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793464	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10793466	0.86[EUR][1000 genomes]
rs10793467	0.86[EUR][1000 genomes]
rs10899843	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899844	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899845	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899846	0.80[EUR][1000 genomes]
rs10899848	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899849	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899850	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899851	0.86[EUR][1000 genomes]
rs10899853	0.86[EUR][1000 genomes]
rs10899854	0.84[EUR][1000 genomes]
rs11238602	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238609	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238617	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12248526	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254814	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2484664	0.81[ASN][1000 genomes]
rs2484665	0.81[ASN][1000 genomes]
rs2484667	0.81[ASN][1000 genomes]
rs2505644	0.82[ASN][1000 genomes]
rs3123657	0.82[ASN][1000 genomes]
rs3123661	0.81[ASN][1000 genomes]
rs3123671	0.83[ASN][1000 genomes]
rs3128245	0.86[ASN][1000 genomes]
rs3128247	0.87[ASN][1000 genomes]
rs3128249	0.86[ASN][1000 genomes]
rs3814561	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3814563	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4078412	0.83[EUR][1000 genomes]
rs4326744	0.87[EUR][1000 genomes]
rs4347333	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4415708	0.80[EUR][1000 genomes]
rs4431980	0.84[EUR][1000 genomes]
rs4537714	0.83[EUR][1000 genomes]
rs61859201	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8181305	0.81[EUR][1000 genomes]
rs872532	0.84[EUR][1000 genomes]
rs9422395	0.82[ASN][1000 genomes]
rs9422564	0.81[ASN][1000 genomes]
rs962557	0.84[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44137000-44143600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:44137800-44143600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:44137800-44143800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:44137800-44143800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:44138200-44143600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
6	chr10:44138400-44143600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:44139000-44143600	ZNF genes & repeats	A549	lung
8	chr10:44139400-44143600	ZNF genes & repeats	Fetal Stomach	stomach
9	chr10:44139400-44143800	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr10:44140400-44143600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:44141600-44143600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:44141800-44143600	Weak transcription	Esophagus	oesophagus
13	chr10:44141800-44143600	Weak transcription	Gastric	stomach
14	chr10:44141800-44143600	Weak transcription	Lung	lung
15	chr10:44141800-44143600	Weak transcription	Small Intestine	intestine
16	chr10:44142000-44143600	Weak transcription	Spleen	Spleen
17	chr10:44142800-44145000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:44143000-44143600	Enhancers	Primary B cells from peripheral blood	blood
19	chr10:44143000-44143600	Active TSS	Colonic Mucosa	Colon
20	chr10:44143000-44143600	Flanking Active TSS	Psoas Muscle	Psoas
21	chr10:44143000-44143600	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr10:44143000-44143800	Flanking Active TSS	Primary T cells from cord blood	blood
23	chr10:44143000-44143800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr10:44143000-44144800	Active TSS	Rectal Smooth Muscle	rectum
25	chr10:44143200-44143600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr10:44143200-44143600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr10:44143200-44143600	Flanking Active TSS	Brain Angular Gyrus	brain
28	chr10:44143200-44143600	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr10:44143200-44143600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:44143200-44143600	Flanking Active TSS	Brain Substantia Nigra	brain
31	chr10:44143200-44143600	Flanking Active TSS	Fetal Brain Female	brain
32	chr10:44143200-44143600	Enhancers	Placenta	Placenta
33	chr10:44143200-44143600	Flanking Active TSS	Thymus	Thymus
34	chr10:44143200-44143800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr10:44143200-44143800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:44143200-44143800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
37	chr10:44143200-44143800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr10:44143200-44143800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr10:44143200-44143800	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr10:44143200-44143800	Flanking Active TSS	Liver	Liver
41	chr10:44143200-44143800	Flanking Active TSS	Brain Cingulate Gyrus	brain
42	chr10:44143200-44143800	Active TSS	Brain Germinal Matrix	brain
43	chr10:44143200-44143800	Flanking Active TSS	Duodenum Mucosa	Duodenum
44	chr10:44143200-44143800	Flanking Active TSS	Fetal Brain Male	brain
45	chr10:44143200-44143800	Flanking Active TSS	Fetal Muscle Leg	muscle
46	chr10:44143200-44143800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
47	chr10:44143200-44143800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr10:44143200-44144000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr10:44143200-44144600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
50	chr10:44143200-44144600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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