Variant report

Variant	rs10793463
Chromosome Location	chr10:44142887-44142888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44101689..44104570-chr10:44142385..44144867,2	K562	blood:
2	chr10:44138867..44141721-chr10:44141933..44143603,2	MCF-7	breast:
3	chr10:43915151..43917098-chr10:44141914..44144023,2	MCF-7	breast:
4	chr10:44121619..44124737-chr10:44140995..44143935,3	K562	blood:
5	chr10:44123689..44125547-chr10:44142014..44144149,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223910	Chromatin interaction
ENSG00000232004	Chromatin interaction
ENSG00000198298	Chromatin interaction
ENSG00000230565	Chromatin interaction
ENSG00000226245	Chromatin interaction
ENSG00000230555	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10430722	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10736820	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10736821	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10736822	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10751325	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10751326	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10751327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751329	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10751330	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10751331	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793454	0.80[EUR][1000 genomes]
rs10793456	0.80[EUR][1000 genomes]
rs10793458	0.85[EUR][1000 genomes]
rs10793459	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793460	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10793461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793464	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10793466	0.86[EUR][1000 genomes]
rs10793467	0.86[EUR][1000 genomes]
rs10899840	0.80[EUR][1000 genomes]
rs10899841	0.80[EUR][1000 genomes]
rs10899843	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899844	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899845	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899846	0.81[EUR][1000 genomes]
rs10899848	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899849	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899850	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899851	0.86[EUR][1000 genomes]
rs10899853	0.86[EUR][1000 genomes]
rs10899854	0.84[EUR][1000 genomes]
rs11238601	0.80[EUR][1000 genomes]
rs11238602	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11238609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238617	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12248526	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12254814	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2484664	0.80[ASN][1000 genomes]
rs2505644	0.81[ASN][1000 genomes]
rs3123657	0.81[ASN][1000 genomes]
rs3123661	0.80[ASN][1000 genomes]
rs3123671	0.82[ASN][1000 genomes]
rs3128245	0.85[ASN][1000 genomes]
rs3128247	0.86[ASN][1000 genomes]
rs3128249	0.85[ASN][1000 genomes]
rs3814561	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3814563	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4078412	0.85[EUR][1000 genomes]
rs4326744	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4347333	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4415708	0.81[EUR][1000 genomes]
rs4431980	0.84[EUR][1000 genomes]
rs4537714	0.85[EUR][1000 genomes]
rs61859187	0.81[EUR][1000 genomes]
rs61859201	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8181305	0.84[EUR][1000 genomes]
rs872532	0.84[EUR][1000 genomes]
rs9422395	0.81[ASN][1000 genomes]
rs962557	0.84[EUR][1000 genomes]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44136800-44143400	ZNF genes & repeats	Fetal Lung	lung
2	chr10:44137000-44143000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr10:44137000-44143400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr10:44137000-44143600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:44137200-44143200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:44137200-44143200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:44137200-44143400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
8	chr10:44137400-44143200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr10:44137400-44143200	ZNF genes & repeats	Fetal Kidney	kidney
10	chr10:44137400-44143400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:44137600-44143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:44137600-44143400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
13	chr10:44137800-44143200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr10:44137800-44143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:44137800-44143600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:44137800-44143800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:44137800-44143800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:44138000-44143000	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr10:44138000-44143200	ZNF genes & repeats	Fetal Brain Male	brain
20	chr10:44138200-44143600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr10:44138400-44143000	Weak transcription	HepG2	liver
22	chr10:44138400-44143600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:44138600-44143200	ZNF genes & repeats	NHDF-Ad	bronchial
24	chr10:44138600-44143400	ZNF genes & repeats	Dnd41	blood
25	chr10:44139000-44143600	ZNF genes & repeats	A549	lung
26	chr10:44139200-44143200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
27	chr10:44139400-44143600	ZNF genes & repeats	Fetal Stomach	stomach
28	chr10:44139400-44143800	ZNF genes & repeats	Fetal Intestine Small	intestine
29	chr10:44139800-44143400	ZNF genes & repeats	GM12878-XiMat	blood
30	chr10:44140400-44143600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:44141000-44143400	Weak transcription	HUVEC	blood vessel
32	chr10:44141600-44143000	Weak transcription	Right Ventricle	heart
33	chr10:44141600-44143200	Weak transcription	Brain Angular Gyrus	brain
34	chr10:44141600-44143600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr10:44141800-44143000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:44141800-44143000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr10:44141800-44143000	Weak transcription	Primary B cells from peripheral blood	blood
38	chr10:44141800-44143000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:44141800-44143000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:44141800-44143200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:44141800-44143400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:44141800-44143400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr10:44141800-44143400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr10:44141800-44143600	Weak transcription	Esophagus	oesophagus
45	chr10:44141800-44143600	Weak transcription	Gastric	stomach
46	chr10:44141800-44143600	Weak transcription	Lung	lung
47	chr10:44141800-44143600	Weak transcription	Small Intestine	intestine
48	chr10:44142000-44143000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr10:44142000-44143000	Weak transcription	Brain Substantia Nigra	brain
50	chr10:44142000-44143000	Weak transcription	Fetal Heart	heart

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