Variant report

Variant	rs4415708
Chromosome Location	chr10:44123474-44123475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr10:44123428-44123660	HepG2	liver:	n/a	chr10:44123562-44123577
2	IRF1	chr10:44123183-44123781	K562	blood:	n/a	n/a
3	RCOR1	chr10:44123430-44123841	K562	blood:	n/a	n/a
4	SPI1	chr10:44123387-44123648	K562	blood:	n/a	n/a
5	MAFF	chr10:44123382-44123763	K562	blood:	n/a	n/a
6	BACH1	chr10:44123375-44123706	K562	blood:	n/a	n/a
7	BATF	chr10:44123463-44123695	GM12878	blood:	n/a	chr10:44123565-44123576
8	JUND	chr10:44123397-44123788	K562	blood:	n/a	chr10:44123567-44123578
9	JUN	chr10:44123429-44123773	K562	blood:	n/a	n/a
10	TAL1	chr10:44123424-44123824	K562	blood:	n/a	n/a
11	MAFK	chr10:44123388-44123760	K562	blood:	n/a	chr10:44123562-44123577
12	MAFK	chr10:44123443-44123700	HepG2	liver:	n/a	chr10:44123562-44123577
13	JUND	chr10:44123408-44123755	HepG2	liver:	n/a	chr10:44123567-44123578
14	EP300	chr10:44123042-44123807	K562	blood:	n/a	n/a
15	CUX1	chr10:44123122-44123935	K562	blood:	n/a	chr10:44123908-44123917
16	IRF1	chr10:44123141-44123739	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44121619..44124737-chr10:44140995..44143935,3	K562	blood:
2	chr10:44119832..44124930-chr10:44125524..44130562,5	K562	blood:

Variant related genes	Relation type
ZNF32-AS3	TF binding region
ENSG00000238263	TF binding region
ENSG00000230565	Chromatin interaction
ENSG00000169740	Chromatin interaction
ENSG00000237389	Chromatin interaction
ENSG00000238263	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10430722	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10430723	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10736820	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10736821	0.84[EUR][1000 genomes]
rs10736822	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10751324	0.92[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs10751325	0.88[CEU][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10751326	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10751327	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs10751328	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10751329	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10751331	0.80[EUR][1000 genomes]
rs10793452	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10793453	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793454	1.00[CEU][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10793455	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10793456	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10793457	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10793458	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793459	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs10793460	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793461	0.85[EUR][1000 genomes]
rs10793463	0.81[EUR][1000 genomes]
rs10793464	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793466	0.96[CEU][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10793467	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899840	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899841	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899842	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899843	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10899844	0.88[CEU][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10899845	0.89[CEU][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10899846	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899848	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10899849	0.83[EUR][1000 genomes]
rs10899850	0.84[EUR][1000 genomes]
rs10899851	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899852	0.87[ASN][1000 genomes]
rs10899853	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899854	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11238601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238602	0.88[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11238609	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs11238617	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12248526	0.84[EUR][1000 genomes]
rs12254814	0.83[EUR][1000 genomes]
rs3123673	0.84[ASN][1000 genomes]
rs3123674	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs3814561	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3814563	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4078412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4326744	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4347333	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4431980	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4537714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61859187	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859201	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8181305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs872532	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs962557	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44119200-44123800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr10:44123200-44124000	Enhancers	K562	blood

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