Variant report

Variant	rs10899849
Chromosome Location	chr10:44144898-44144899
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:44143600-44144979	MCF-7	breast:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
2	MAX	chr10:44143673-44144933	A549	lung:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
3	E2F6	chr10:44143682-44144958	A549	lung:	n/a	chr10:44144304-44144313 chr10:44144307-44144317 chr10:44144306-44144316
4	SREBP1	chr10:44143073-44144967	GM12878	blood:	n/a	n/a
5	MAX	chr10:44143624-44144910	K562	blood:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
6	MAX	chr10:44144106-44144898	H1-hESC	embryonic stem cell:	n/a	n/a
7	E2F6	chr10:44143584-44144937	H1-hESC	embryonic stem cell:	n/a	chr10:44144304-44144313 chr10:44144307-44144317 chr10:44144306-44144316
8	MAX	chr10:44143549-44144925	H1-hESC	embryonic stem cell:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
9	E2F6	chr10:44143593-44144946	H1-hESC	embryonic stem cell:	n/a	chr10:44144304-44144313 chr10:44144307-44144317 chr10:44144306-44144316
10	ZNF143	chr10:44143456-44144922	K562	blood:	n/a	chr10:44144406-44144415 chr10:44144307-44144317 chr10:44144399-44144417 chr10:44144327-44144336 chr10:44144306-44144316 chr10:44144408-44144417 chr10:44144301-44144311 chr10:44143924-44143942 chr10:44144325-44144343 chr10:44143930-44143948 chr10:44144325-44144334
11	REST	chr10:44143428-44144937	H1-neurons	neurons:	n/a	chr10:44144175-44144188
12	MAX	chr10:44143741-44144920	GM12878	blood:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
13	ELF1	chr10:44144247-44144915	MCF-7	breast:	n/a	chr10:44144283-44144295 chr10:44144530-44144542
14	ZNF384	chr10:44144577-44144963	K562	blood:	n/a	n/a
15	MAX	chr10:44143583-44144949	A549	lung:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
16	MYC	chr10:44144871-44144952	MCF-7	breast:	n/a	n/a
17	MAX	chr10:44143596-44144972	H1-hESC	embryonic stem cell:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
18	MAX	chr10:44143675-44144909	HepG2	liver:	n/a	chr10:44143927-44143937 chr10:44143979-44143989

No.	Distal block	Cell Line	Cell type
1	chr10:44125188..44126781-chr10:44143124..44145486,2	K562	blood:
2	chr10:44144821..44147176-chr10:44149146..44150955,2	MCF-7	breast:
3	chr10:44140472..44142370-chr10:44143162..44146127,2	MCF-7	breast:
4	chr10:44100612..44103408-chr10:44143126..44145241,3	MCF-7	breast:
5	chr10:44101716..44103228-chr10:44144444..44146869,2	MCF-7	breast:

Variant related genes	Relation type
ZNF32	TF binding region
ENSG00000198298	Chromatin interaction
ENSG00000232004	Chromatin interaction
ENSG00000169740	Chromatin interaction
ENSG00000238263	Chromatin interaction
ENSG00000230565	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10430722	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10736820	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10736821	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10736822	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10751325	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10751326	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10751327	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751328	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751329	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10751330	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10751331	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793458	0.81[EUR][1000 genomes]
rs10793459	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793460	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10793461	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793463	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793464	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10793466	0.89[EUR][1000 genomes]
rs10793467	0.89[EUR][1000 genomes]
rs10899843	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899844	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899845	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899846	0.83[EUR][1000 genomes]
rs10899848	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899850	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899851	0.89[EUR][1000 genomes]
rs10899853	0.89[EUR][1000 genomes]
rs10899854	0.87[EUR][1000 genomes]
rs11238601	0.82[EUR][1000 genomes]
rs11238602	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11238609	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238617	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12248526	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12254814	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2484664	0.80[ASN][1000 genomes]
rs2505644	0.81[ASN][1000 genomes]
rs3123657	0.81[ASN][1000 genomes]
rs3123661	0.80[ASN][1000 genomes]
rs3123671	0.82[ASN][1000 genomes]
rs3128245	0.85[ASN][1000 genomes]
rs3128247	0.86[ASN][1000 genomes]
rs3128249	0.85[ASN][1000 genomes]
rs3814561	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3814563	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4078412	0.81[EUR][1000 genomes]
rs4326744	0.90[EUR][1000 genomes]
rs4347333	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4415708	0.83[EUR][1000 genomes]
rs4431980	0.87[EUR][1000 genomes]
rs4537714	0.81[EUR][1000 genomes]
rs61859201	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs872532	0.87[EUR][1000 genomes]
rs9422395	0.81[ASN][1000 genomes]
rs962557	0.87[EUR][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44142800-44145000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:44143200-44145000	Active TSS	Fetal Kidney	kidney
3	chr10:44143200-44145000	Active TSS	HSMM	muscle
4	chr10:44143200-44145000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr10:44143200-44145000	Active TSS	Osteobl	bone
6	chr10:44143400-44145000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
7	chr10:44143400-44145000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr10:44143400-44145000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr10:44143400-44145000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr10:44143400-44145000	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr10:44143400-44145000	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr10:44143400-44145000	Active TSS	Rectal Mucosa Donor 31	rectum
13	chr10:44143400-44145000	Active TSS	Right Atrium	heart
14	chr10:44143400-44145000	Active TSS	HMEC	breast
15	chr10:44143400-44145000	Active TSS	NHDF-Ad	bronchial
16	chr10:44143400-44145200	Active TSS	Colon Smooth Muscle	Colon
17	chr10:44143400-44145200	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr10:44143600-44145000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
19	chr10:44143600-44145000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:44143600-44145000	Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr10:44143600-44145000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:44143600-44145000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:44143600-44145000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:44143600-44145000	Active TSS	Fetal Intestine Large	intestine
25	chr10:44143600-44145000	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr10:44143600-44145000	Active TSS	Fetal Lung	lung
27	chr10:44143600-44145000	Active TSS	Psoas Muscle	Psoas
28	chr10:44143600-44145000	Active TSS	Thymus	Thymus
29	chr10:44143600-44145000	Active TSS	A549	lung
30	chr10:44143600-44145200	Active TSS	Brain Substantia Nigra	brain
31	chr10:44143600-44145200	Active TSS	Stomach Mucosa	stomach
32	chr10:44143600-44145600	Active TSS	Brain Anterior Caudate	brain
33	chr10:44143800-44145000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
34	chr10:44143800-44145000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:44143800-44145000	Active TSS	Primary T cells from cord blood	blood
36	chr10:44143800-44145000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:44143800-44145000	Active TSS	Fetal Brain Male	brain
38	chr10:44143800-44145000	Active TSS	Fetal Intestine Small	intestine
39	chr10:44143800-44145200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:44144000-44145000	Active TSS	Cortex derived primary cultured neurospheres	brain
41	chr10:44144000-44145000	Active TSS	Colonic Mucosa	Colon
42	chr10:44144400-44145000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:44144400-44145000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:44144400-44145000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:44144400-44145000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:44144400-44145000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:44144400-44145000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr10:44144400-44145000	Flanking Active TSS	Duodenum Mucosa	Duodenum
49	chr10:44144400-44145200	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr10:44144400-44145400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links