Variant report

Variant	rs3123657
Chromosome Location	chr10:44164658-44164659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44158916..44161624-chr10:44163530..44166378,2	MCF-7	breast:
2	chr10:44160745..44162621-chr10:44163515..44166197,2	K562	blood:
3	chr10:44151901..44153868-chr10:44162528..44164728,2	K562	blood:

Variant related genes	Relation type
ENSG00000228426	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10736821	0.82[ASN][1000 genomes]
rs10751327	0.82[ASN][1000 genomes]
rs10751328	0.82[ASN][1000 genomes]
rs10751330	0.83[ASN][1000 genomes]
rs10751331	0.82[ASN][1000 genomes]
rs10793461	0.82[ASN][1000 genomes]
rs10793463	0.81[ASN][1000 genomes]
rs10899844	0.82[CHB][hapmap]
rs10899845	0.81[JPT][hapmap]
rs10899848	0.80[ASN][1000 genomes]
rs10899849	0.81[ASN][1000 genomes]
rs10899850	0.82[ASN][1000 genomes]
rs11238609	0.82[ASN][1000 genomes]
rs12248526	0.82[ASN][1000 genomes]
rs12254814	0.81[ASN][1000 genomes]
rs2484664	0.99[ASN][1000 genomes]
rs2484665	0.98[ASN][1000 genomes]
rs2484667	0.98[ASN][1000 genomes]
rs2505644	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123661	0.99[ASN][1000 genomes]
rs3123668	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs3123669	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs3123671	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3123673	0.91[EUR][1000 genomes]
rs3123674	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs3123676	0.88[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs3128245	0.94[ASN][1000 genomes]
rs3128247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3128249	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9422395	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9422564	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44163200-44167000	Weak transcription	Osteobl	bone
2	chr10:44163200-44167200	Weak transcription	Ovary	ovary
3	chr10:44163200-44167400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:44163400-44165400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:44163400-44176800	Weak transcription	Right Atrium	heart

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