Variant report

Variant	rs2505644
Chromosome Location	chr10:44175098-44175099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44173211..44175756-chr10:44184314..44186963,2	K562	blood:
2	chr10:44173211..44175882-chr10:44184314..44186858,2	K562	blood:
3	chr10:44173522..44175308-chr10:44181432..44183348,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10736821	0.82[ASN][1000 genomes]
rs10751327	0.82[ASN][1000 genomes]
rs10751328	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs10751330	0.83[ASN][1000 genomes]
rs10751331	0.82[ASN][1000 genomes]
rs10793459	0.83[CHB][hapmap]
rs10793461	0.82[ASN][1000 genomes]
rs10793463	0.81[ASN][1000 genomes]
rs10899844	0.86[CHB][hapmap]
rs10899845	0.87[CHB][hapmap]
rs10899848	0.80[ASN][1000 genomes]
rs10899849	0.81[ASN][1000 genomes]
rs10899850	0.82[ASN][1000 genomes]
rs11238609	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs12248526	0.82[ASN][1000 genomes]
rs12254814	0.81[ASN][1000 genomes]
rs2484664	0.99[ASN][1000 genomes]
rs2484665	0.98[ASN][1000 genomes]
rs2484667	0.98[ASN][1000 genomes]
rs3123657	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123661	0.99[ASN][1000 genomes]
rs3123668	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs3123669	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs3123671	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3123673	0.91[EUR][1000 genomes]
rs3123674	0.91[EUR][1000 genomes]
rs3123676	0.86[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs3128245	0.94[ASN][1000 genomes]
rs3128247	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3128249	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9422395	0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9422564	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3333353	chr10:44175096-44175262	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44163400-44176800	Weak transcription	Right Atrium	heart
2	chr10:44167600-44175200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:44169800-44175200	Weak transcription	Gastric	stomach
4	chr10:44170600-44175200	Weak transcription	Left Ventricle	heart
5	chr10:44170600-44176800	Weak transcription	Spleen	Spleen
6	chr10:44173800-44177400	Enhancers	Fetal Brain Male	brain
7	chr10:44174000-44175200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:44174000-44176000	Enhancers	Fetal Brain Female	brain
9	chr10:44174000-44176200	Enhancers	Brain Germinal Matrix	brain
10	chr10:44174000-44177400	Enhancers	Fetal Lung	lung
11	chr10:44174200-44175200	Enhancers	Stomach Smooth Muscle	stomach
12	chr10:44174200-44175600	Enhancers	Esophagus	oesophagus
13	chr10:44174200-44175800	Enhancers	Pancreas	Pancrea
14	chr10:44174200-44177000	Enhancers	Colon Smooth Muscle	Colon
15	chr10:44174200-44177000	Enhancers	Fetal Stomach	stomach
16	chr10:44174200-44177400	Enhancers	Fetal Muscle Leg	muscle
17	chr10:44174400-44175400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:44174400-44175400	Enhancers	Stomach Mucosa	stomach
19	chr10:44174400-44175600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr10:44174400-44176200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:44174400-44184600	Weak transcription	Lung	lung
22	chr10:44174400-44185000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:44174600-44175600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr10:44174600-44176200	Enhancers	Rectal Smooth Muscle	rectum
25	chr10:44175000-44175400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:44175000-44175400	Enhancers	Fetal Muscle Trunk	muscle
27	chr10:44175000-44175600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:44175000-44175600	Enhancers	Right Ventricle	heart
29	chr10:44175000-44175600	Enhancers	NH-A	brain
30	chr10:44175000-44175800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:44175000-44175800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:44175000-44176800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:44175000-44177000	Enhancers	Adipose Nuclei	Adipose

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