Variant report

Variant	rs3123671
Chromosome Location	chr10:44157885-44157886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44149066..44151240-chr10:44156120..44158632,2	K562	blood:
2	chr10:44142888..44144791-chr10:44155963..44158409,2	K562	blood:

Variant related genes	Relation type
ENSG00000169740	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10736821	0.82[ASN][1000 genomes]
rs10751327	0.83[ASN][1000 genomes]
rs10751328	0.83[ASN][1000 genomes]
rs10751330	0.84[ASN][1000 genomes]
rs10751331	0.83[ASN][1000 genomes]
rs10793461	0.83[ASN][1000 genomes]
rs10793463	0.82[ASN][1000 genomes]
rs10899844	0.82[CHB][hapmap]
rs10899845	0.82[CHB][hapmap]
rs10899848	0.81[ASN][1000 genomes]
rs10899849	0.82[ASN][1000 genomes]
rs10899850	0.82[ASN][1000 genomes]
rs11238609	0.83[ASN][1000 genomes]
rs12248526	0.83[ASN][1000 genomes]
rs12254814	0.82[ASN][1000 genomes]
rs2484664	0.96[ASN][1000 genomes]
rs2484665	0.96[ASN][1000 genomes]
rs2484667	0.96[ASN][1000 genomes]
rs2505644	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3123657	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3123661	0.96[ASN][1000 genomes]
rs3123668	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs3123669	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap]
rs3123673	0.89[EUR][1000 genomes]
rs3123674	0.81[CEU][hapmap];0.90[EUR][1000 genomes]
rs3123676	0.93[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs3128245	0.95[ASN][1000 genomes]
rs3128247	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3128249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9422395	0.88[CHB][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9422564	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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