Variant report

Variant	rs3123674
Chromosome Location	chr10:44127462-44127463
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44100401..44102576-chr10:44125762..44128541,3	MCF-7	breast:
2	chr10:44119832..44124930-chr10:44125524..44130562,5	K562	blood:

Variant related genes	Relation type
ENSG00000223910	Chromatin interaction
ENSG00000232004	Chromatin interaction
ENSG00000198298	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10736820	0.86[ASN][1000 genomes]
rs10736822	0.83[CHB][hapmap];0.83[JPT][hapmap];0.84[LWK][hapmap];0.93[YRI][hapmap];0.86[ASN][1000 genomes]
rs10751326	0.85[ASN][1000 genomes]
rs10751327	0.84[LWK][hapmap];0.93[YRI][hapmap]
rs10751328	0.84[LWK][hapmap];0.93[YRI][hapmap]
rs10751329	0.86[ASN][1000 genomes]
rs10793458	0.81[ASN][1000 genomes]
rs10793460	0.86[ASN][1000 genomes]
rs10793464	0.83[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs10793466	0.80[ASN][1000 genomes]
rs10899841	0.86[CHB][hapmap]
rs10899846	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs10899848	0.93[YRI][hapmap]
rs10899851	0.83[ASN][1000 genomes]
rs10899853	0.80[ASN][1000 genomes]
rs11238601	0.83[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs11238609	0.82[LWK][hapmap];0.93[YRI][hapmap]
rs11238617	0.86[ASN][1000 genomes]
rs2505644	0.91[EUR][1000 genomes]
rs3123657	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs3123668	0.87[CEU][hapmap]
rs3123669	0.81[CEU][hapmap]
rs3123671	0.81[CEU][hapmap];0.90[EUR][1000 genomes]
rs3123673	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3123678	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3128247	0.88[CEU][hapmap];0.88[LWK][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3128249	0.81[CEU][hapmap]
rs3814561	0.83[CHB][hapmap];0.85[ASN][1000 genomes]
rs3814563	0.86[ASN][1000 genomes]
rs4078412	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs4326744	0.83[ASN][1000 genomes]
rs4347333	0.84[ASN][1000 genomes]
rs4415708	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs4537714	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs61859201	0.86[ASN][1000 genomes]
rs8181305	0.83[CHB][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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