Variant report

Variant	rs10793464
Chromosome Location	chr10:44143154-44143155
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SREBP1	chr10:44143073-44144967	GM12878	blood:	n/a	n/a
2	CEBPB	chr10:44143087-44143255	HepG2	liver:	n/a	n/a
3	CEBPB	chr10:44143014-44143325	HepG2	liver:	n/a	n/a
4	SETDB1	chr10:44142946-44144804	U2OS	brain:	n/a	chr10:44144323-44144347 chr10:44144298-44144307 chr10:44144304-44144313 chr10:44144395-44144419
5	ARID3A	chr10:44143069-44143314	HepG2	liver:	n/a	n/a
6	CEBPB	chr10:44143023-44143324	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44101689..44104570-chr10:44142385..44144867,2	K562	blood:
2	chr10:44125188..44126781-chr10:44143124..44145486,2	K562	blood:
3	chr10:44100612..44103408-chr10:44143126..44145241,3	MCF-7	breast:
4	chr10:44138867..44141721-chr10:44141933..44143603,2	MCF-7	breast:
5	chr10:43915151..43917098-chr10:44141914..44144023,2	MCF-7	breast:
6	chr10:44121619..44124737-chr10:44140995..44143935,3	K562	blood:
7	chr10:44123689..44125547-chr10:44142014..44144149,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF485-2	chr10:44143017-44143467	ENSG00000230565.1

No data

Variant related genes	Relation type
ZNF32	TF binding region
ENSG00000238263	Chromatin interaction
ENSG00000198298	Chromatin interaction
ENSG00000223910	Chromatin interaction
ENSG00000226245	Chromatin interaction
ENSG00000230565	Chromatin interaction
ENSG00000232004	Chromatin interaction
ENSG00000230555	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10430722	0.82[EUR][1000 genomes]
rs10430723	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10736820	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736821	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10736822	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751324	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10751325	0.87[CEU][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs10751326	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751327	0.88[CEU][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10751328	0.88[CEU][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10751329	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751330	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10751331	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10793452	0.96[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes]
rs10793453	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10793454	0.93[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10793455	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10793456	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10793457	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10793458	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793459	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs10793460	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793461	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10793463	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10793466	0.96[CEU][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793467	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899840	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899841	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899842	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899844	0.81[ASW][hapmap];0.88[CEU][hapmap];0.81[LWK][hapmap];0.82[MEX][hapmap];0.87[MKK][hapmap];0.92[TSI][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes]
rs10899845	0.88[CEU][hapmap];0.88[YRI][hapmap]
rs10899846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899848	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10899849	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10899850	0.87[EUR][1000 genomes]
rs10899851	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899852	0.93[ASN][1000 genomes]
rs10899853	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899854	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11238601	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238602	0.87[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11238609	0.88[CEU][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11238617	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248526	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12254814	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3123673	0.89[ASN][1000 genomes]
rs3123674	0.83[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs3814561	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3814563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4078412	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4326744	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4347333	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4415708	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4431980	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4537714	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61859187	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61859201	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8181305	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs872532	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs962557	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44136800-44143400	ZNF genes & repeats	Fetal Lung	lung
2	chr10:44137000-44143400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr10:44137000-44143600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:44137200-44143200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:44137200-44143200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:44137200-44143400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
7	chr10:44137400-44143200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr10:44137400-44143200	ZNF genes & repeats	Fetal Kidney	kidney
9	chr10:44137400-44143400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:44137600-44143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:44137600-44143400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
12	chr10:44137800-44143200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr10:44137800-44143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:44137800-44143600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:44137800-44143800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:44137800-44143800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:44138000-44143200	ZNF genes & repeats	Fetal Brain Male	brain
18	chr10:44138200-44143600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
19	chr10:44138400-44143600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:44138600-44143200	ZNF genes & repeats	NHDF-Ad	bronchial
21	chr10:44138600-44143400	ZNF genes & repeats	Dnd41	blood
22	chr10:44139000-44143600	ZNF genes & repeats	A549	lung
23	chr10:44139200-44143200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
24	chr10:44139400-44143600	ZNF genes & repeats	Fetal Stomach	stomach
25	chr10:44139400-44143800	ZNF genes & repeats	Fetal Intestine Small	intestine
26	chr10:44139800-44143400	ZNF genes & repeats	GM12878-XiMat	blood
27	chr10:44140400-44143600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:44141000-44143400	Weak transcription	HUVEC	blood vessel
29	chr10:44141600-44143200	Weak transcription	Brain Angular Gyrus	brain
30	chr10:44141600-44143600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:44141800-44143200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:44141800-44143400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:44141800-44143400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr10:44141800-44143400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:44141800-44143600	Weak transcription	Esophagus	oesophagus
36	chr10:44141800-44143600	Weak transcription	Gastric	stomach
37	chr10:44141800-44143600	Weak transcription	Lung	lung
38	chr10:44141800-44143600	Weak transcription	Small Intestine	intestine
39	chr10:44142000-44143200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr10:44142000-44143200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:44142000-44143200	Weak transcription	Left Ventricle	heart
42	chr10:44142000-44143200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr10:44142000-44143200	Weak transcription	Thymus	Thymus
44	chr10:44142000-44143400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:44142000-44143400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr10:44142000-44143400	Weak transcription	Aorta	Aorta
47	chr10:44142000-44143400	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr10:44142000-44143400	Weak transcription	Pancreas	Pancrea
49	chr10:44142000-44143400	Weak transcription	NHLF	lung
50	chr10:44142000-44143600	Weak transcription	Spleen	Spleen

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