Variant report

Variant	rs10764638
Chromosome Location	chr10:27031214-27031215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26985284..26987567-chr10:27030613..27032619,2	K562	blood:
2	chr10:27002629..27005030-chr10:27030219..27032691,2	K562	blood:

Variant related genes	Relation type
ENSG00000148459	Chromatin interaction
ENSG00000234788	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1031858	0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10741117	0.88[CEU][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10741119	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10741121	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10764639	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10764641	0.92[CEU][hapmap];0.94[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10764643	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10829063	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10829064	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10829071	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11015399	1.00[YRI][hapmap]
rs11015402	1.00[YRI][hapmap]
rs12221102	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1324637	0.92[CEU][hapmap];0.94[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1409130	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1542553	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1543849	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1590445	0.92[CEU][hapmap];0.94[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1998631	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1998632	0.92[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1998634	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2031562	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.83[ASN][1000 genomes]
rs2148110	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2182293	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2368184	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2368185	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3802609	0.85[CEU][hapmap]
rs3802612	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3916988	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4376804	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4747575	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4749185	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6482575	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7078119	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7078227	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7895417	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7895559	0.86[ASN][1000 genomes]
rs7907630	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7915128	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:26994400-27040800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
4	chr10:26999800-27037400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:27001000-27031800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:27001200-27041200	Strong transcription	Fetal Thymus	thymus
7	chr10:27001800-27041200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:27007800-27041200	Strong transcription	Dnd41	blood
9	chr10:27009600-27032200	Strong transcription	Fetal Muscle Trunk	muscle
10	chr10:27010000-27034600	Strong transcription	Thymus	Thymus
11	chr10:27011200-27047400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr10:27012000-27044400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:27015200-27035400	Weak transcription	Stomach Mucosa	stomach
14	chr10:27015800-27032400	Strong transcription	Fetal Stomach	stomach
15	chr10:27018000-27036400	Strong transcription	K562	blood
16	chr10:27018000-27038800	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr10:27019800-27036000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:27020400-27035400	Strong transcription	Primary T cells from cord blood	blood
19	chr10:27021600-27069600	Weak transcription	Esophagus	oesophagus
20	chr10:27023400-27040600	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:27023400-27057800	Weak transcription	Gastric	stomach
22	chr10:27023400-27070000	Weak transcription	Pancreas	Pancrea
23	chr10:27023600-27032400	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:27023800-27031800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:27023800-27040600	Strong transcription	Duodenum Mucosa	Duodenum
26	chr10:27024000-27032200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:27024000-27032400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr10:27024000-27041000	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:27024000-27047600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr10:27024000-27048000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:27024200-27036600	Strong transcription	A549	lung
32	chr10:27024200-27048600	Weak transcription	Fetal Heart	heart
33	chr10:27024400-27031800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr10:27024400-27041000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:27024600-27032600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr10:27024600-27041000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:27024800-27040800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:27024800-27048000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:27025000-27031800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:27025000-27054200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr10:27025200-27035200	Weak transcription	Fetal Kidney	kidney
42	chr10:27025600-27033400	Weak transcription	Ovary	ovary
43	chr10:27025600-27069600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:27025800-27032400	Weak transcription	Brain Substantia Nigra	brain
45	chr10:27025800-27033000	Weak transcription	Placenta	Placenta
46	chr10:27025800-27039200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:27025800-27044400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr10:27025800-27068200	Weak transcription	Spleen	Spleen
49	chr10:27025800-27070800	Weak transcription	Aorta	Aorta
50	chr10:27026000-27032200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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