Variant report

Variant	rs3802612
Chromosome Location	chr10:27037893-27037894
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27036002..27038696-chr10:27039416..27041996,4	K562	blood:
2	chr10:27035456..27038957-chr10:27039081..27041563,4	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1031858	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741117	0.88[CEU][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10741119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10741121	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764638	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10764639	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764643	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10829063	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10829064	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10829071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12221102	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1324637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1542553	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1543849	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1590445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998631	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998632	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998634	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031562	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2148110	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2182293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2368184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368185	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3916988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4376804	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4747575	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6482575	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078119	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7078227	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895417	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7895559	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7907630	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915128	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:26994400-27040800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
4	chr10:27001200-27041200	Strong transcription	Fetal Thymus	thymus
5	chr10:27001800-27041200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:27007800-27041200	Strong transcription	Dnd41	blood
7	chr10:27011200-27047400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr10:27012000-27044400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:27018000-27038800	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr10:27021600-27069600	Weak transcription	Esophagus	oesophagus
11	chr10:27023400-27040600	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:27023400-27057800	Weak transcription	Gastric	stomach
13	chr10:27023400-27070000	Weak transcription	Pancreas	Pancrea
14	chr10:27023800-27040600	Strong transcription	Duodenum Mucosa	Duodenum
15	chr10:27024000-27041000	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:27024000-27047600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr10:27024000-27048000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:27024200-27048600	Weak transcription	Fetal Heart	heart
19	chr10:27024400-27041000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:27024600-27041000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:27024800-27040800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:27024800-27048000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:27025000-27054200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr10:27025600-27069600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:27025800-27039200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:27025800-27044400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:27025800-27068200	Weak transcription	Spleen	Spleen
28	chr10:27025800-27070800	Weak transcription	Aorta	Aorta
29	chr10:27026000-27069600	Weak transcription	Brain Angular Gyrus	brain
30	chr10:27027200-27043600	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr10:27027400-27044000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr10:27027400-27069400	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:27027800-27069600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr10:27028200-27044400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:27028200-27068600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:27028400-27069800	Weak transcription	NHLF	lung
37	chr10:27028600-27051600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:27028600-27062200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr10:27029400-27040800	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr10:27029600-27051200	Weak transcription	Brain Anterior Caudate	brain
41	chr10:27029800-27069600	Weak transcription	HSMMtube	muscle
42	chr10:27030200-27043000	Strong transcription	Primary B cells from cord blood	blood
43	chr10:27030200-27048400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr10:27030400-27041000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:27030600-27041200	Strong transcription	HSMM	muscle
46	chr10:27031000-27040600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:27031200-27038800	Strong transcription	NH-A	brain
48	chr10:27031200-27041600	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr10:27031200-27049600	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr10:27031400-27049800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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