Variant report

Variant	rs2182293
Chromosome Location	chr10:27119082-27119083
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1031858	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10741117	0.87[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10741119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10741121	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10764638	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10764639	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10764641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10764643	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10829063	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10829064	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10829071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12221102	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1324637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1409130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1542553	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1543849	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1590445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1998631	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1998632	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1998634	0.95[CEU][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2031562	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2148110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2368185	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2505969	0.84[EUR][1000 genomes]
rs3802612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3916988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4376804	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4747575	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6482575	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7078119	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7078227	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7895417	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7895559	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7907630	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7915128	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv11591	chr10:27117697-27135748	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27095000-27130600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:27095000-27138600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:27095400-27129800	Weak transcription	NHEK	skin
4	chr10:27095600-27129000	Weak transcription	Right Atrium	heart
5	chr10:27095600-27132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:27097200-27120000	Weak transcription	HepG2	liver
8	chr10:27099800-27128800	Weak transcription	K562	blood
9	chr10:27101800-27129000	Weak transcription	Stomach Mucosa	stomach
10	chr10:27104800-27119200	Weak transcription	Esophagus	oesophagus
11	chr10:27104800-27129200	Weak transcription	Colonic Mucosa	Colon
12	chr10:27105000-27122000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:27106600-27122000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:27107000-27129000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:27107400-27129000	Weak transcription	Spleen	Spleen
16	chr10:27108000-27120600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:27109400-27132600	Weak transcription	HMEC	breast
18	chr10:27110000-27130400	Weak transcription	HUVEC	blood vessel
19	chr10:27111400-27125200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:27111800-27129000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr10:27111800-27129200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:27111800-27147000	Weak transcription	Fetal Intestine Large	intestine
23	chr10:27112000-27119400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:27112000-27121000	Weak transcription	NHDF-Ad	bronchial
25	chr10:27112000-27122000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:27112000-27126000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:27112000-27128800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:27112000-27130400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:27112200-27119200	Weak transcription	Fetal Thymus	thymus
30	chr10:27112200-27121000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:27112200-27121600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:27112400-27129000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:27112800-27120800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:27112800-27121600	Weak transcription	Left Ventricle	heart
35	chr10:27112800-27125000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:27112800-27129000	Weak transcription	Primary B cells from cord blood	blood
37	chr10:27112800-27129000	Weak transcription	Brain Anterior Caudate	brain
38	chr10:27112800-27129000	Weak transcription	Small Intestine	intestine
39	chr10:27115600-27119200	Weak transcription	Fetal Stomach	stomach
40	chr10:27115800-27119200	Weak transcription	Fetal Intestine Small	intestine
41	chr10:27115800-27124000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:27117400-27120000	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr10:27117600-27121800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:27118000-27119800	Enhancers	Primary B cells from peripheral blood	blood
45	chr10:27118000-27124600	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr10:27118200-27119800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr10:27118200-27120200	ZNF genes & repeats	GM12878-XiMat	blood
48	chr10:27118400-27120800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:27118400-27121200	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr10:27118600-27119600	Enhancers	Primary hematopoietic stem cells	blood

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