Variant report

Variant	rs1542553
Chromosome Location	chr10:27096068-27096069
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27095663..27097538-chr10:27098853..27101729,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1031858	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10741117	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10741119	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741121	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764638	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10764639	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764641	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764643	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829063	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10829064	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10829071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221102	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1324637	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1409130	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1543849	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1590445	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1998631	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1998632	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1998634	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2031562	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2148110	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2182293	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2368184	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2368185	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2505969	0.82[EUR][1000 genomes]
rs3802612	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3916988	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4376804	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4747575	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749185	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482575	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7078119	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7078227	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7895417	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7895559	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7907630	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7915128	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27075000-27104600	Weak transcription	Esophagus	oesophagus
2	chr10:27082200-27105400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:27085600-27119000	Weak transcription	Fetal Lung	lung
4	chr10:27086200-27096600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr10:27086600-27110400	Weak transcription	Fetal Intestine Large	intestine
6	chr10:27087000-27097000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:27087200-27096800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr10:27088200-27100800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:27088400-27096800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:27088600-27098800	Weak transcription	Pancreas	Pancrea
11	chr10:27090000-27096400	Weak transcription	Fetal Stomach	stomach
12	chr10:27090400-27097400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr10:27090600-27096800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr10:27091800-27113200	Weak transcription	Placenta	Placenta
15	chr10:27092200-27099600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr10:27092600-27096400	Weak transcription	HepG2	liver
17	chr10:27093000-27096800	Enhancers	Small Intestine	intestine
18	chr10:27093400-27112400	Weak transcription	Left Ventricle	heart
19	chr10:27093600-27103000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr10:27093800-27096600	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr10:27094000-27096800	Enhancers	Primary T cells fromperipheralblood	blood
22	chr10:27094000-27108000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:27094200-27096200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr10:27094600-27096800	Enhancers	Dnd41	blood
25	chr10:27094600-27099000	Weak transcription	A549	lung
26	chr10:27094600-27099400	Weak transcription	Fetal Muscle Leg	muscle
27	chr10:27094600-27108400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:27094600-27111200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:27094800-27104400	Weak transcription	Psoas Muscle	Psoas
30	chr10:27094800-27108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:27094800-27111200	Weak transcription	Ovary	ovary
32	chr10:27095000-27096800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:27095000-27130600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr10:27095000-27138600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:27095200-27096400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:27095200-27096600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:27095200-27096600	Weak transcription	Adipose Nuclei	Adipose
38	chr10:27095200-27099400	Weak transcription	Fetal Intestine Small	intestine
39	chr10:27095200-27105000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:27095200-27106600	Weak transcription	Osteobl	bone
41	chr10:27095200-27110800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr10:27095200-27119000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:27095400-27099000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr10:27095400-27104400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr10:27095400-27110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr10:27095400-27111200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:27095400-27113000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr10:27095400-27116200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:27095400-27129800	Weak transcription	NHEK	skin
50	chr10:27095600-27096200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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