Variant report

Variant	rs1998632
Chromosome Location	chr10:27047739-27047740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27037937..27039490-chr10:27047558..27049695,2	MCF-7	breast:
2	chr10:27047313..27050355-chr10:27148384..27151067,3	K562	blood:
3	chr10:27038672..27041354-chr10:27047222..27050106,2	K562	blood:

Variant related genes	Relation type
ENSG00000136754	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1031858	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741117	0.88[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10741119	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10741121	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764638	0.92[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10764639	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764641	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764643	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10829063	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10829064	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10829071	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015211	1.00[YRI][hapmap]
rs12221102	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1324637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1542553	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1543849	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1590445	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998631	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998634	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031562	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2148110	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2182293	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2368184	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368185	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802612	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3916988	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4376804	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4747575	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6482575	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078119	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7078227	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895417	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7895559	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7902245	1.00[YRI][hapmap]
rs7907630	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915128	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
3	chr10:27021600-27069600	Weak transcription	Esophagus	oesophagus
4	chr10:27023400-27057800	Weak transcription	Gastric	stomach
5	chr10:27023400-27070000	Weak transcription	Pancreas	Pancrea
6	chr10:27024000-27048000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:27024200-27048600	Weak transcription	Fetal Heart	heart
8	chr10:27024800-27048000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:27025000-27054200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr10:27025600-27069600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:27025800-27068200	Weak transcription	Spleen	Spleen
12	chr10:27025800-27070800	Weak transcription	Aorta	Aorta
13	chr10:27026000-27069600	Weak transcription	Brain Angular Gyrus	brain
14	chr10:27027400-27069400	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:27027800-27069600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:27028200-27068600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:27028400-27069800	Weak transcription	NHLF	lung
18	chr10:27028600-27051600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:27028600-27062200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:27029600-27051200	Weak transcription	Brain Anterior Caudate	brain
21	chr10:27029800-27069600	Weak transcription	HSMMtube	muscle
22	chr10:27030200-27048400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:27031200-27049600	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:27031400-27049800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr10:27032000-27068200	Weak transcription	Small Intestine	intestine
26	chr10:27032000-27069600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:27032400-27069400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:27032400-27069600	Weak transcription	Lung	lung
29	chr10:27032600-27053400	Weak transcription	Left Ventricle	heart
30	chr10:27032600-27069800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:27032800-27060600	Weak transcription	Brain Substantia Nigra	brain
32	chr10:27033200-27064000	Weak transcription	HepG2	liver
33	chr10:27033600-27051000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr10:27033600-27069200	Weak transcription	Psoas Muscle	Psoas
35	chr10:27034000-27056400	Weak transcription	Fetal Brain Female	brain
36	chr10:27034000-27061800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:27034000-27069000	Weak transcription	Colonic Mucosa	Colon
38	chr10:27034000-27069600	Weak transcription	Ovary	ovary
39	chr10:27034000-27069800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr10:27034200-27049800	Weak transcription	Fetal Stomach	stomach
41	chr10:27034400-27069600	Weak transcription	Right Ventricle	heart
42	chr10:27034600-27049200	Weak transcription	Thymus	Thymus
43	chr10:27034600-27057200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:27034800-27049400	Weak transcription	Fetal Intestine Small	intestine
45	chr10:27035600-27060400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr10:27036600-27049800	Weak transcription	Fetal Kidney	kidney
47	chr10:27036600-27053200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:27036800-27068400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:27037400-27062200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:27037600-27047800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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