Variant report

Variant	rs7895417
Chromosome Location	chr10:27141178-27141179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27140185..27142274-chr10:27148669..27150535,2	MCF-7	breast:
2	chr10:27140612..27143943-chr10:27145359..27148469,3	K562	blood:
3	chr10:27139974..27141536-chr10:27144594..27147018,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136754	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1031858	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10741117	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10741119	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10741121	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10764638	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10764639	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10764641	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10764643	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10829063	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10829064	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10829071	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12221102	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1324637	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1409130	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1542553	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1543849	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1590445	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1998631	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1998632	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1998634	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2031562	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2148110	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2182293	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2368184	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2368185	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2505969	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3802612	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3916988	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4376804	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4747575	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4749185	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6482575	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7078119	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7078227	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7895559	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7907630	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7915128	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:27111800-27147000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:27119600-27147200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:27120600-27142600	Weak transcription	HepG2	liver
5	chr10:27122600-27143400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:27123000-27145000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:27124400-27146200	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:27128000-27143200	Weak transcription	Osteobl	bone
9	chr10:27129200-27142600	Weak transcription	Right Ventricle	heart
10	chr10:27129400-27142000	Weak transcription	Lung	lung
11	chr10:27129400-27146000	Weak transcription	Pancreas	Pancrea
12	chr10:27129400-27146400	Weak transcription	Gastric	stomach
13	chr10:27129400-27146600	Weak transcription	Esophagus	oesophagus
14	chr10:27129400-27147200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:27129400-27148200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:27129600-27146600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:27130000-27143800	Weak transcription	Brain Angular Gyrus	brain
18	chr10:27130200-27143000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:27130200-27143600	Weak transcription	NHDF-Ad	bronchial
20	chr10:27130200-27145600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:27130800-27145000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:27131200-27143200	Weak transcription	Stomach Mucosa	stomach
23	chr10:27131200-27143400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr10:27131200-27146000	Weak transcription	Right Atrium	heart
25	chr10:27131600-27145000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:27132000-27142800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:27133600-27146400	Weak transcription	Psoas Muscle	Psoas
28	chr10:27133600-27148200	Weak transcription	Aorta	Aorta
29	chr10:27134000-27143200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:27134000-27143600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:27134000-27145000	Weak transcription	Fetal Thymus	thymus
32	chr10:27134000-27145400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr10:27134000-27145400	Weak transcription	Adipose Nuclei	Adipose
34	chr10:27134000-27146800	Weak transcription	Brain Hippocampus Middle	brain
35	chr10:27134200-27145400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:27134400-27144200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr10:27134600-27143800	Weak transcription	Thymus	Thymus
38	chr10:27135800-27148200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr10:27137000-27141400	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr10:27137000-27146200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:27137000-27146800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:27137400-27145400	Weak transcription	Hela-S3	cervix
43	chr10:27138400-27142200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:27138600-27143800	Weak transcription	Colon Smooth Muscle	Colon
45	chr10:27138600-27147000	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr10:27139000-27143600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:27139200-27142200	Enhancers	Primary T cells fromperipheralblood	blood
48	chr10:27139600-27141200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:27139800-27145400	Weak transcription	Brain Substantia Nigra	brain
50	chr10:27140000-27141400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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