Variant report

Variant	rs7915128
Chromosome Location	chr10:27054375-27054376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27050329..27053574-chr10:27053805..27057713,4	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1031858	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741117	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10741119	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10741121	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764638	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10764639	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764641	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764643	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10829063	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10829064	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10829071	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12221102	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1324637	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409130	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1542553	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1543849	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1590445	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998631	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998632	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998634	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031562	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2148110	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2182293	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2368184	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368185	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802612	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3916988	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4376804	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4747575	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749185	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6482575	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078119	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7078227	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895417	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7895559	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7907630	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
3	chr10:27021600-27069600	Weak transcription	Esophagus	oesophagus
4	chr10:27023400-27057800	Weak transcription	Gastric	stomach
5	chr10:27023400-27070000	Weak transcription	Pancreas	Pancrea
6	chr10:27025600-27069600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:27025800-27068200	Weak transcription	Spleen	Spleen
8	chr10:27025800-27070800	Weak transcription	Aorta	Aorta
9	chr10:27026000-27069600	Weak transcription	Brain Angular Gyrus	brain
10	chr10:27027400-27069400	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:27027800-27069600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:27028200-27068600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:27028400-27069800	Weak transcription	NHLF	lung
14	chr10:27028600-27062200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:27029800-27069600	Weak transcription	HSMMtube	muscle
16	chr10:27032000-27068200	Weak transcription	Small Intestine	intestine
17	chr10:27032000-27069600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:27032400-27069400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:27032400-27069600	Weak transcription	Lung	lung
20	chr10:27032600-27069800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:27032800-27060600	Weak transcription	Brain Substantia Nigra	brain
22	chr10:27033200-27064000	Weak transcription	HepG2	liver
23	chr10:27033600-27069200	Weak transcription	Psoas Muscle	Psoas
24	chr10:27034000-27056400	Weak transcription	Fetal Brain Female	brain
25	chr10:27034000-27061800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:27034000-27069000	Weak transcription	Colonic Mucosa	Colon
27	chr10:27034000-27069600	Weak transcription	Ovary	ovary
28	chr10:27034000-27069800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr10:27034400-27069600	Weak transcription	Right Ventricle	heart
30	chr10:27034600-27057200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr10:27035600-27060400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:27036800-27068400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:27037400-27062200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:27040000-27059200	Weak transcription	Brain Germinal Matrix	brain
35	chr10:27040800-27060800	Weak transcription	Fetal Muscle Leg	muscle
36	chr10:27043800-27057400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr10:27044800-27057600	Weak transcription	NHEK	skin
38	chr10:27044800-27062600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:27044800-27064800	Weak transcription	HMEC	breast
40	chr10:27044800-27068000	Weak transcription	K562	blood
41	chr10:27044800-27068400	Weak transcription	A549	lung
42	chr10:27044800-27069000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr10:27044800-27069600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr10:27044800-27070400	Weak transcription	HUVEC	blood vessel
45	chr10:27044800-27082000	Weak transcription	Fetal Lung	lung
46	chr10:27046000-27065400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:27047200-27057800	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr10:27047200-27060200	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr10:27047800-27054600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr10:27048200-27062000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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