Variant report

Variant	rs6482575
Chromosome Location	chr10:27070605-27070606
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27068463..27071008-chr10:27149449..27152029,3	K562	blood:
2	chr10:27064202..27066612-chr10:27068536..27071634,3	K562	blood:
3	chr10:27063322..27065877-chr10:27068617..27071382,2	K562	blood:
4	chr10:27054901..27057514-chr10:27069095..27071711,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136754	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1031858	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741117	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10741119	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10741121	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764638	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10764639	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764641	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764643	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10829063	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10829064	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10829071	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12221102	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1324637	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409130	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1542553	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1543849	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1590445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998631	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998632	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998634	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031562	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2148110	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2182293	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2368184	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368185	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802612	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3916988	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4376804	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4747575	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749185	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7078119	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7078227	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895417	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7895559	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7907630	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915128	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv6132	chr10:27066081-27075522	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27025800-27070800	Weak transcription	Aorta	Aorta
2	chr10:27044800-27082000	Weak transcription	Fetal Lung	lung
3	chr10:27051400-27082000	Weak transcription	Fetal Stomach	stomach
4	chr10:27057800-27072000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:27058000-27072200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:27058000-27079200	Weak transcription	Dnd41	blood
7	chr10:27064600-27074200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr10:27066200-27074600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr10:27066400-27074000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr10:27066400-27074600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:27066400-27075200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr10:27066600-27071200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr10:27066800-27073400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:27067200-27073000	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:27067600-27072200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:27067800-27071000	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr10:27067800-27071200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:27067800-27071200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr10:27067800-27071400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr10:27068000-27070800	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr10:27068000-27071200	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr10:27068200-27071000	Flanking Active TSS	GM12878-XiMat	blood
23	chr10:27068200-27071200	Enhancers	Stomach Mucosa	stomach
24	chr10:27068200-27071200	Enhancers	Spleen	Spleen
25	chr10:27068200-27072000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:27068400-27071000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:27068400-27071200	Enhancers	Duodenum Mucosa	Duodenum
28	chr10:27068400-27071200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr10:27068400-27071800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr10:27068400-27072000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:27068400-27079400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr10:27068600-27071000	Enhancers	Fetal Intestine Small	intestine
33	chr10:27068600-27071200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:27068600-27073000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:27068600-27074200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr10:27068800-27071000	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr10:27069000-27071200	Enhancers	H9 Cell Line	embryonic stem cell
38	chr10:27069000-27071200	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr10:27069000-27071200	Enhancers	Brain Cingulate Gyrus	brain
40	chr10:27069000-27071200	Enhancers	Colonic Mucosa	Colon
41	chr10:27069000-27071600	Enhancers	Primary T cells fromperipheralblood	blood
42	chr10:27069000-27072400	Weak transcription	HepG2	liver
43	chr10:27069000-27073000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr10:27069200-27070800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:27069200-27071000	Enhancers	Placenta	Placenta
46	chr10:27069200-27071200	Enhancers	Left Ventricle	heart
47	chr10:27069200-27071200	Enhancers	Psoas Muscle	Psoas
48	chr10:27069200-27078800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:27069400-27071000	Enhancers	Brain Hippocampus Middle	brain
50	chr10:27069400-27071200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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