Variant report

Variant	rs10793447
Chromosome Location	chr10:44094186-44094187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44092829..44096471-chr10:44100518..44103440,4	K562	blood:
2	chr10:44094103..44096869-chr10:44100518..44103220,3	K562	blood:
3	chr10:44066615..44070675-chr10:44091946..44095178,3	MCF-7	breast:
4	chr10:44090591..44094323-chr10:44095437..44099024,4	K562	blood:

Variant related genes	Relation type
ENSG00000232004	Chromatin interaction
ENSG00000196793	Chromatin interaction
ENSG00000198298	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10793446	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10793448	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10793449	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793450	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793451	0.89[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10899837	0.92[ASN][1000 genomes]
rs10899838	1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs11238592	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1974282	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039723	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs2039724	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2066045	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2393936	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2393946	0.88[ASN][1000 genomes]
rs3123680	0.89[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs3123681	0.87[ASN][1000 genomes]
rs4948749	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6593362	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs7342073	0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7474652	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10793447	ZNF239	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44091400-44094200	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:44091400-44095200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:44091400-44101400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:44091600-44094200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:44091800-44101200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:44092000-44094200	Weak transcription	Left Ventricle	heart
7	chr10:44092000-44094200	Weak transcription	Spleen	Spleen
8	chr10:44092200-44094200	Weak transcription	K562	blood
9	chr10:44092200-44101400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:44092600-44094200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:44093000-44094200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:44093000-44101600	Weak transcription	Primary T cells from cord blood	blood
13	chr10:44093200-44095200	Enhancers	Fetal Heart	heart
14	chr10:44093800-44094600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr10:44094000-44094400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:44094000-44094400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:44094000-44094400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr10:44094000-44094400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr10:44094000-44094400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:44094000-44094400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr10:44094000-44094400	Enhancers	Fetal Muscle Leg	muscle
22	chr10:44094000-44094600	Enhancers	Fetal Lung	lung
23	chr10:44094000-44094600	Enhancers	Fetal Stomach	stomach
24	chr10:44094000-44095000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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