Variant report

Variant	rs10793449
Chromosome Location	chr10:44096760-44096761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44090591..44094323-chr10:44095437..44099024,4	K562	blood:
2	chr10:44068669..44071698-chr10:44096672..44099575,3	K562	blood:
3	chr10:44094103..44096869-chr10:44100518..44103220,3	K562	blood:
4	chr10:44075835..44077526-chr10:44095693..44098243,2	K562	blood:
5	chr10:44075546..44077335-chr10:44095591..44097193,2	K562	blood:

Variant related genes	Relation type
ENSG00000196793	Chromatin interaction
ENSG00000232004	Chromatin interaction
ENSG00000198298	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10793446	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10793447	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793448	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10793450	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793451	0.89[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10899837	0.90[ASN][1000 genomes]
rs10899838	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs11238592	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1974282	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2039723	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs2039724	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2066045	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2066046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2393936	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2393946	0.87[ASN][1000 genomes]
rs3123680	0.89[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs3123681	0.86[ASN][1000 genomes]
rs4948749	0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6593362	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs7342073	0.89[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs7474652	0.90[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10793449	ZNF239	cis	lymphoblastoid	seeQTL
rs10793449	ZNF239	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44091400-44101400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:44091800-44101200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:44092200-44101400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:44093000-44101600	Weak transcription	Primary T cells from cord blood	blood
5	chr10:44095000-44101400	Weak transcription	Spleen	Spleen

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