Variant report

Variant	rs4948749
Chromosome Location	chr10:44092463-44092464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44086156..44088393-chr10:44091016..44092665,2	MCF-7	breast:
2	chr10:44089879..44092724-chr10:44102524..44104158,2	MCF-7	breast:
3	chr10:44066615..44070675-chr10:44091946..44095178,3	MCF-7	breast:
4	chr10:44090591..44094323-chr10:44095437..44099024,4	K562	blood:

Variant related genes	Relation type
ENSG00000196793	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10793446	0.84[ASN][1000 genomes]
rs10793447	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10793448	0.94[ASN][1000 genomes]
rs10793449	0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10793450	0.88[ASN][1000 genomes]
rs10793451	0.94[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs10899837	0.86[ASN][1000 genomes]
rs10899838	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs11238592	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1974282	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2039723	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs2039724	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2066045	0.88[ASN][1000 genomes]
rs2066046	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2393936	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2393946	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123680	0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs3123681	0.91[ASN][1000 genomes]
rs6593362	0.88[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7342073	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7474652	0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4948749	ZNF239	cis	parietal	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44090200-44092800	Enhancers	Fetal Heart	heart
2	chr10:44090800-44094000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:44090800-44094000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:44091000-44092600	Enhancers	Fetal Lung	lung
5	chr10:44091000-44093400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:44091400-44092600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr10:44091400-44094000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:44091400-44094200	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:44091400-44095200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:44091400-44101400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:44091600-44092600	Enhancers	Primary hematopoietic stem cells	blood
12	chr10:44091600-44093000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:44091600-44094200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:44091800-44093000	Enhancers	Primary T cells from cord blood	blood
15	chr10:44091800-44101200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:44092000-44092600	Enhancers	GM12878-XiMat	blood
17	chr10:44092000-44092600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr10:44092000-44093000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:44092000-44094000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:44092000-44094200	Weak transcription	Left Ventricle	heart
21	chr10:44092000-44094200	Weak transcription	Spleen	Spleen
22	chr10:44092200-44092600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr10:44092200-44094000	Weak transcription	Fetal Stomach	stomach
24	chr10:44092200-44094200	Weak transcription	K562	blood
25	chr10:44092200-44101400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:44092400-44093000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr10:44092400-44094000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr10:44092400-44094000	Weak transcription	Fetal Muscle Leg	muscle

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