Variant report

Variant	rs2039724
Chromosome Location	chr10:44093618-44093619
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44092829..44096471-chr10:44100518..44103440,4	K562	blood:
2	chr10:44066615..44070675-chr10:44091946..44095178,3	MCF-7	breast:
3	chr10:44090591..44094323-chr10:44095437..44099024,4	K562	blood:

Variant related genes	Relation type
ENSG00000198298	Chromatin interaction
ENSG00000232004	Chromatin interaction
ENSG00000196793	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10793446	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10793447	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10793448	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793449	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10793450	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10793451	0.95[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10899837	0.85[ASN][1000 genomes]
rs10899838	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs11238592	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1974282	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2039723	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs2066045	0.88[ASN][1000 genomes]
rs2066046	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2393936	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2393946	0.96[ASN][1000 genomes]
rs3123680	0.82[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs3123681	0.87[ASN][1000 genomes]
rs4948749	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6593362	0.82[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7342073	0.82[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7474652	0.92[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44090800-44094000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:44090800-44094000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:44091400-44094000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr10:44091400-44094200	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:44091400-44095200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:44091400-44101400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:44091600-44094200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:44091800-44101200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:44092000-44094000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:44092000-44094200	Weak transcription	Left Ventricle	heart
11	chr10:44092000-44094200	Weak transcription	Spleen	Spleen
12	chr10:44092200-44094000	Weak transcription	Fetal Stomach	stomach
13	chr10:44092200-44094200	Weak transcription	K562	blood
14	chr10:44092200-44101400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:44092400-44094000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr10:44092400-44094000	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:44092600-44094000	Weak transcription	Fetal Lung	lung
18	chr10:44092600-44094200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:44093000-44094000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:44093000-44094200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:44093000-44101600	Weak transcription	Primary T cells from cord blood	blood
22	chr10:44093200-44095200	Enhancers	Fetal Heart	heart
23	chr10:44093400-44093800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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